IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
R: Rearranged
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

IMGT gene name	IMGT allele name	Fct		R		T	Pr	Chromosomal localization	IMGT/LIGM-DB locus reference sequences								IMGT/LIGM-DB sequences from the literature
IMGT gene name	IMGT allele name	Fct		R		T	Pr	Chromosomal localization	Strain	Clone names	Accession numbers	Positions in the sequence (J-GENE-UNIT)	Secondary accession numbers				Strain			Clone names	Accession numbers	Positions in the sequence (J-GENE-UNIT)
	TRAJ1	TRAJ1*01		ORF	(1)					2	Tuebingen						NW_003334160	[1]	MAP	1516196..1516285			DKEY-161L11		BX681417	[3]	complement(30564..30653)
	TRAJ2	TRAJ2*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1517843..1517933			DKEY-161L11		BX681417	[3]	complement(28916..29006)
	TRAJ3	TRAJ3*01		ORF	(2)					2	Tuebingen						NW_003334160	[1]	MAP	1518666..1518753			DKEY-161L11		BX681417	[3]	complement(28096..28183))
	TRAJ4	TRAJ4*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1519354..1519445			DKEY-161L11		BX681417	[3]	complement(27404..27495)
	TRAJ5	TRAJ5*01		ORF	(2)					2	Tuebingen						NW_003334160	[1]	MAP	1519923..1520009			DKEY-161L11		BX681417	[3]	complement(26840..26926)
	TRAJ6	TRAJ6*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1520688..1520778			DKEY-161L11		BX681417	[3]	complement(26071..26161)
	TRAJ7	TRAJ7*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1522145..1522235			DKEY-161L11		BX681417	[3]	complement(24614..24704)
	TRAJ8	TRAJ8*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1522403..1522493			DKEY-161L11		BX681417	[3]	complement(24356..24446)
	TRAJ9	TRAJ9*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1523317..1523408			DKEY-161L11		BX681417	[3]	complement(23441..23532)
	TRAJ10	TRAJ10*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1523700..1523790			DKEY-161L11		BX681417	[3]	complement(23059..23149)
	TRAJ11	TRAJ11*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1523999..1524089			DKEY-161L11		BX681417	[3]	complement(22760..22850)
	TRAJ12	TRAJ12*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1524546..1524636			DKEY-161L11		BX681417	[3]	complement(22213..22303)
	TRAJ13	TRAJ13*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1524792..1524882			DKEY-161L11		BX681417	[3]	complement(21967..22057)
	TRAJ14	TRAJ14*01		F			+	+		2	Tuebingen						NW_003334160	[1]	MAP	1525253..1525344			DKEY-161L11		BX681417	[3]	complement(21505..21596)
	TRAJ15	TRAJ15*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1525869..1525959			DKEY-161L11		BX681417	[3]	complement(20890..20980)
	TRAJ16	TRAJ16*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1526099..1526189			DKEY-161L11		BX681417	[3]	complement(20660..20750)
	TRAJ17	TRAJ17*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1526509..1526600			DKEY-161L11		BX681417	[3]	complement(20249..20340)
	TRAJ18	TRAJ18*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1527130..1527220			DKEY-161L11		BX681417	[3]	complement(19629..19719)
	TRAJ19	TRAJ19*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1527414..1527504			DKEY-161L11		BX681417	[3]	complement(19345..19435)
	TRAJ20	TRAJ20*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1527729..1527820			DKEY-161L11		BX681417	[3]	complement(19029..19120)
	TRAJ21	TRAJ21*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1528009..1528099			DKEY-161L11		BX681417	[3]	complement(18750..18840)
	TRAJ22	TRAJ22*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1528768..1528858			DKEY-161L11		BX681417	[3]	complement(17991..18081)
	TRAJ23	TRAJ23*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1529223..1529310			DKEY-161L11		BX681417	[3]	complement(17539..17626)
	TRAJ24	TRAJ24*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1529513..1529603			DKEY-161L11		BX681417	[3]	complement(17246..17336)
	TRAJ25	TRAJ25*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1529786..1529877			DKEY-161L11		BX681417	[3]	complement(16972..17063)
	TRAJ26	TRAJ26*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1530123..1530213			DKEY-161L11		BX681417	[3]	complement(16636..16726)
	TRAJ27	TRAJ27*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1530312..1530402			DKEY-161L11		BX681417	[3]	complement(16447..16537)
	TRAJ28	TRAJ28*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1530947..1531037			DKEY-161L11		BX681417	[3]	complement(15812..15902)
	TRAJ29	TRAJ29*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1531532..1531623			DKEY-161L11		BX681417	[3]	complement(15226..15317)
	TRAJ30	TRAJ30*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1532098..1532189			DKEY-161L11		BX681417	[3]	complement(14660..14751)
	TRAJ31	TRAJ31*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1532427..1532517			DKEY-161L11		BX681417	[3]	complement(14332..14422)
	TRAJ32	TRAJ32*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1532824..1532908			DKEY-161L11		BX681417	[3]	complement(13941..14025)
	TRAJ33	TRAJ33*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1533213..1533303			DKEY-161L11		BX681417	[3]	complement(13546..13636)
	TRAJ34	TRAJ34*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1533590..1533681			DKEY-161L11		BX681417	[3]	complement(13168..13259)
	TRAJ35	TRAJ35*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1534204..1534293			DKEY-161L11		BX681417	[3]	complement(12556..12645)
	TRAJ36	TRAJ36*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1534810..1534900			DKEY-161L11		BX681417	[3]	complement(11949..12039)
	TRAJ37	TRAJ37*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1535115..1535202			DKEY-161L11		BX681417	[3]	complement(11647..11734)
	TRAJ38	TRAJ38*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1535784..1535874			DKEY-161L11		BX681417	[3]	complement(10975..11065)
	TRAJ39	TRAJ39*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1536132..1536223			DKEY-161L11		BX681417	[3]	complement(10626..10717)
	TRAJ40	TRAJ40*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1536694..1536785			DKEY-161L11		BX681417	[3]	complement(10064..10155)
	TRAJ41	TRAJ41*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1537143..1537233			DKEY-161L11		BX681417	[3]	complement(9616..9706)
	TRAJ42	TRAJ42*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1537509..1537593			DKEY-161L11		BX681417	[3]	complement(9256..9340)
	TRAJ43	TRAJ43*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1538177..1538268			DKEY-161L11		BX681417	[3]	complement(8581..8672)
	TRAJ44	TRAJ44*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1538482..1538572			DKEY-161L11		BX681417	[3]	complement(8277..8367)
	TRAJ45	TRAJ45*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1538940..1539029			DKEY-161L11		BX681417	[3]	complement(7820..7909)
	TRAJ46	TRAJ46*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1539595..1539685			DKEY-161L11		BX681417	[3]	complement(7164..7254)
	TRAJ47	TRAJ47*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1539887..1539977			DKEY-161L11		BX681417	[3]	complement(6872..6962)
	TRAJ48	TRAJ48*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1540337..1540428			DKEY-161L11		BX681417	[3]	complement(6421..6512)
	TRAJ49	TRAJ49*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1541063..1541154			DKEY-161L11		BX681417	[3]	complement(5695..5786)
	TRAJ50	TRAJ50*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1541480..1541570			DKEY-161L11		BX681417	[3]	complement(5279..5369)
	TRAJ51	TRAJ51*01		ORF	(3)					2	Tuebingen						NW_003334160	[1]	MAP	1542558..1542642			DKEY-161L11		BX681417	[3]	complement(4207..4291)
	TRAJ52	TRAJ52*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1542821..1542912			DKEY-161L11		BX681417	[3]	complement(3937..4028)
	TRAJ53	TRAJ53*01		F			+	+		2	Tuebingen						NW_003334160	[1]	MAP	1543312..1543402			DKEY-161L11		BX681417	[3]	complement(3447..3537)
	TRAJ54	TRAJ54*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1543658..1543742			DKEY-161L11		BX681417	[3]	complement(3107..3191)
	TRAJ55	TRAJ55*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1544248..1544338			DKEY-161L11		BX681417	[3]	complement(2511..2601)
	TRAJ56	TRAJ56*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1544541..1544630			DKEY-161L11		BX681417	[3]	complement(2219..2309)
	TRAJ57	TRAJ57*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1544994..1545081			DKEY-161L11		BX681417	[3]	complement(1768..1855)
	TRAJ58	TRAJ58*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1545809..1545893			DKEY-161L11		BX681417	[3]	complement(956..1040)
	TRAJ59	TRAJ59*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1546161..1546248			DKEY-161L11		BX681417	[3]	complement(601..688)
	TRAJ60	TRAJ60*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1546693..1546783			DKEY-161L11		BX681417	[3]	complement(66..156)
	TRAJ61	TRAJ61*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1547744..1547831
	TRAJ62	TRAJ62*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1548210..1548297
	TRAJ63	TRAJ63*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1548533..1548620
	TRAJ64	TRAJ64*01		F						2	Tuebingen						NW_003334160	[1]	MAP	1548882..1548972
TRAJ65	TRAJ65*01	F							2	Tuebingen			NW_003334160	[1]		MAP	1549162..1549249
TRAJ66	TRAJ66*01	F							2	Tuebingen			NW_003334160	[1]		MAP	1549662..1549747
TRAJ67	TRAJ67*01	F							2	Tuebingen			NW_003334160	[1]		MAP	1549885..1549966
TRAJ68	TRAJ68*01	F							2	Tuebingen			NW_003334160	[1]		MAP	1550242..1550323
TRAJ69	TRAJ69*01	F							2	Tuebingen			NW_003334160	[1]		MAP	1550667..1550751
TRAJ70	TRAJ70*01	F				+	+		2	Tuebingen			NW_003334160	[1]		MAP	1551127..1551217
TRAJ71	TRAJ71*01	F							2	Tuebingen			NW_003334160	[1]		MAP	1551985..1552074
TRAJ72	TRAJ72*01	F							2	Tuebingen			NW_003334160	[1]		MAP	1552285..1552372
TRAJ73	TRAJ73*01	F							2	Tuebingen			NW_003334160	[1]		MAP	1552589..1552676
TRAJ74	TRAJ74*01	F							2	Tuebingen			NW_003334160	[1]		MAP	1553727..1553811
TRAJ75	TRAJ75*01	F							2	Tuebingen			NW_003334160	[1]		MAP	1554541..1554628
TRAJ76	TRAJ76*01	F							2	Tuebingen			NW_003334160	[1]		MAP	1554972..1555056
TRAJ77	TRAJ77*01	F							2	Tuebingen			NW_003334160	[1]		MAP	1555555..1555638
TRAJ78	TRAJ78*01	F							2	Tuebingen			NW_003334160	[1]		MAP	1555995..1556079
TRAJ79	TRAJ79*01	F							2	Tuebingen			NW_003334160	[1]		MAP	1556377..1556461
TRAJ80	TRAJ80*01	F							2	Tuebingen			NW_003334160	[1]		MAP	1557356..1557440
TRAJ81	TRAJ81*01	F							2	Tuebingen			NW_003334160	[1]		MAP	1558397..1558481
TRAJ82	TRAJ82*01	F							2	Tuebingen			NW_003334160	[1]		MAP	1558637..1558719
TRAJ83	TRAJ83*01	F							2	Tuebingen			NW_003334160	[1]		MAP	1559170..1559254
TRAJ84	TRAJ84*01	F							2	Tuebingen			NW_003334160	[1]		MAP	1560746..1560830
TRAJ85	TRAJ85*01	F							2	Tuebingen			NW_003334160	[1]		MAP	1561094..1561178
TRAJ86	TRAJ86*01	F							2	Tuebingen			NW_003334160	[1]		MAP	1562316..1562400
TRAJ87	TRAJ87*01	F							2	Tuebingen			NW_003334160	[1]		MAP	1563904..1563988
TRAJ88	TRAJ88*01	F							2	Tuebingen			NW_003334160	[1]		MAP	1564679..1564763
TRAJ89	TRAJ89*01	F							2	Tuebingen			NW_003334160	[1]		MAP	1565008..1565095
TRAJ90	TRAJ90*01	F							2	Tuebingen			NW_003334160	[1]		MAP	1565561..1565644					BUSM1-172D23	AL591399	[2]	complement(97478..97561)
TRAJ91	TRAJ91*01	F							2	Tuebingen			NW_003334160	[1]		MAP	1565950..1566032
TRAJ91	TRAJ91*02	F							2		BUSM1-172D23		AL591399	[2]	(7)		complement(97090..97172)
TRAJ92	TRAJ92*01	F							2	Tuebingen			NW_003334160	[1]		MAP	1566357..1566439
TRAJ92	TRAJ92*02	F							2		BUSM1-172D23		AL591399	[2]	(7)		complement(96683..96765)
TRAJ93	TRAJ93*01	F							2	Tuebingen			NW_003334160	[1]		MAP	1566653..1566738
TRAJ93	TRAJ93*02	F							2		BUSM1-172D23		AL591399	[2]	(7)		complement(96384..96469)
TRAJ94	TRAJ94*01	F							2	Tuebingen			NW_003334160	[1]		MAP	1567130..1567214
TRAJ94	TRAJ94*02	F							2		BUSM1-172D23		AL591399	[2]	(7)		complement(95901..95985)
TRAJ95	TRAJ95*01	F							2	Tuebingen			NW_003334160	[1]		MAP	1567512..1567597					BUSM1-172D23	AL591399	[2]	complement(95515..95600)
TRAJ96	TRAJ96*01	ORF	(4)						2	Tuebingen			NW_003334160	[1]		MAP	1567998..1568080
TRAJ96	TRAJ96*02	F							2		BUSM1-172D23		AL591399	[2]	(7)		complement(95033..95115)
TRAJ97	TRAJ97*01	F							2	Tuebingen			NW_003334160	[1]		MAP	1568550..1568635
TRAJ97	TRAJ97*02	F							2		BUSM1-172D23		AL591399	[2]	(7)		complement(94478..94563)
TRAJ98	TRAJ98*01	F							2	Tuebingen			NW_003334160	[1]		MAP	1569741..1569826					BUSM1-172D23	AL591399	[2]	complement(93277..93362)
TRAJ99	TRAJ99*01	F							2	Tuebingen			NW_003334160	[1]		MAP	1570476..1570560					BUSM1-172D23	AL591399	[2]	complement(92542..92626)
TRAJ100	TRAJ100*01	ORF	(3)						2	Tuebingen			NW_003334160	[1]		MAP	1570947..1571034
TRAJ100	TRAJ100*02	ORF	(3)						2		BUSM1-172D23		AL591399	[2]	(7)		complement(92063..92150)
TRAJ101	TRAJ101*01	F							2	Tuebingen			NW_003334160	[1]		MAP	1571261..1571346					BUSM1-172D23	AL591399	[2]	complement(91750..91835)
TRAJ102	TRAJ102*01	ORF	(3)						2	Tuebingen			NW_003334160	[1]		MAP	1571595..1571682					BUSM1-172D23	AL591399	[2]	complement(91413..91500)
TRAJ103	TRAJ103*01	F							2	Tuebingen			NW_003334160	[1]		MAP	1571909..1571993
TRAJ103	TRAJ103*02	F							2		BUSM1-172D23		AL591399	[2]	(7)		complement(91102..91186)
TRAJ104	TRAJ104*01	ORF	(5)						2	Tuebingen			NW_003334160	[1]		MAP	1572537..1572624
TRAJ104	TRAJ104*02	ORF	(5)						2		BUSM1-172D23		AL591399	[2]	(7)		complement(90462..90549)
TRAJ105	TRAJ105*01	F				+	+		2	Tuebingen			NW_003334160	[1]		MAP	1572750..1572837					BUSM1-172D23	AL591399	[2]	complement(90255..90342)
TRAJ106	TRAJ106*01	ORF	(3)						2	Tuebingen			NW_003334160	[1]		MAP	1573016..1573103
TRAJ106	TRAJ106*02	ORF	(3)						2		BUSM1-172D23		AL591399	[2]	(7)		complement(89987..90074)
TRAJ107	TRAJ107*01	F							2	Tuebingen			NW_003334160	[1]		MAP	1573499..1573583
TRAJ107	TRAJ107*02	F				+	+		2		BUSM1-172D23		AL591399	[2]	(7)		complement(89501..89585)
TRAJ108	TRAJ108*01	F							2	Tuebingen			NW_003334160	[1]		MAP	complement(89501..89585)
TRAJ108	TRAJ108*02	F							2		BUSM1-172D23		AL591399	[2]	(7)		complement(89205..89289)
TRAJ109	TRAJ109*01	ORF	(3)						2	Tuebingen			NW_003334160	[1]		MAP	1574515..1574602
TRAJ109	TRAJ109*02	ORF	(3)						2		BUSM1-172D23		AL591399	[2]	(7)		complement(88486..88573)
TRAJ110	TRAJ110*01	F							2	Tuebingen			NW_003334160	[1]		MAP	1574836..1574920					BUSM1-172D23	AL591399	[2]	complement(88168..88252)
TRAJ111	TRAJ111*01	F							2	Tuebingen			NW_003334160	[1]		MAP	1575416..1575501					BUSM1-172D23	AL591399	[2]	complement(87577..87662)
TRAJ112	TRAJ112*01	F							2	Tuebingen			NW_003334160	[1]		MAP	1520279..1520363					DKEY-161L11	BX681417	[3]	complement(26486..26570)
TRAJ113	TRAJ113*01	F							2	Tuebingen			NW_003334160	[1]		MAP	1521148..1521238					DKEY-161L11	BX681417	[3]	complement(25611..25701)
TRAJ114	TRAJ114*01	ORF	(3)						2	Tuebingen			NW_003334160	[1]		MAP	1540733..1540823					DKEY-161L11	BX681417	[3]	complement(6026..6116)
TRAJ115	TRAJ115*01	ORF	(4)						2	Tuebingen			NW_003334160	[1]		MAP	1547441..1547525
TRAJ116	TRAJ116*01	F							2	Tuebingen			NW_003334160	[1]		MAP	1554092..1554179
TRAJ117	TRAJ117*01	ORF	(3)						2	Tuebingen			NW_003334160	[1]		MAP	1557852..1557936
TRAJ118	TRAJ118*01	ORF	(4)						2	Tuebingen			NW_003334160	[1]		MAP	1559489..1559573
TRAJ119	TRAJ119*01	P	(6)						2	Tuebingen			NW_003334160	[1]		MAP	1561473..1561557
TRAJ120	TRAJ120*01	F							2	Tuebingen			NW_003334160	[1]		MAP	1561977..1562062
TRAJ121	TRAJ121*01	F							2	Tuebingen			NW_003334160	[1]		MAP	1563134..1563218
TRAJ122	TRAJ122*01	ORF	(3)						2	Tuebingen			NW_003334160	[1]		MAP	1564275..1564359
TRAJ123	TRAJ123*01	F							2	Tuebingen			NW_003334160	[1]		MAP	1569113..1569197					BUSM1-172D23	AL591399	[2]	complement(93915..93999)

MAP: Mapped reference sequences.

IMGT notes:

(1) Non conserved consensus sequence: FGXG is replaced by MGXG
(2) Noncanonical DONOR-SPLICE: ngc instead of ngt
(3) Non conserved consensus sequence: FGXG is replaced by FAXG
(4) Non conserved consensus sequence: FGXG is replaced by FSXG
(5) Non conserved consensus sequence: FGXG is replaced by FTXG
(6) In frame STOP-CODON in J-REGION, non conserved consensus sequence, FGXG is replaced by FAXG
(7) Sequence not in locus reference sequence (sequence NW_003334160)

IMGT references:

[1] Howe,K. et al. Nature 496(7446):498-503(2013). PMID:23594743
[2] Hammond S. Unpublished.
[3] Kerry G. unpublished.

More information:

See also (IMGT Scientific chart):

Created:: 07/06/2017
Last updated:: 22/09/2023
Authors:: Saida Hadi-Saljoqi

IMGT Repertoire (IG and TR)

Gene table: zebrafish (Danio rerio) TRAJ