IMGT Repertoire (IG and TR)


Gene table: human (Homo sapiens) IGLJ

Citing this page: Pallarès, N. et al., Exp. Clin. Immunogenet., 15, 8-18 (1998) pdf

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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Click here to see Human IGLJ-C/OR18 processed gene

IMGT gene name IMGT allele name Fct Chromosomal localization R T Pr Positions in the locus IMGT/LIGM-DB reference sequences IMGT/LIGM-DB sequences from the literature
Clone names Accession numbers Positions in the sequence (J-REGION) Secondary accession numbers Clone names Accession numbers Positions in the sequence (J-REGION)
IGLJ1 IGLJ1*01 F 22q11.2 J1 X04457 [1] (3) X51755 [5] (3) 2428-2465
X06877 [4] (3)
D87023 [9] (3)
IGLJ2 IGLJ2*01 F 22q11.2 J2 M15641 [3] X51755 [5] 8249-8286
X06878 [4]
D87023 [9]
IGLJ3 IGLJ3*01 F 22q11.2 J3 M15642 [3] X51755 [5] 13639-13676
IGLJ3*02 F 22q11.2 J3 D87023 [9]
IGLJ4 IGLJ4*01 ORF (1) 22q11.2 J4 X51755 [5] 19209-19246 D87023 [9]
D87017 [9]
IGLJ5 IGLJ5*01 ORF (1) 22q11.2 J5 X51755 [5] 22918-22955 X57808 [8]
IGLJ5*02 ORF (1) 22q11.2 J5 D87017 [9]
IGLJ6 IGLJ6*01 F 22q11.2 J6 M18338 [2] X58181 [6] M61768 [7]
X57808 [8]
D87017 [9]
X51755 [5] (2)
S77011 [10]
IGLJ7 IGLJ7*01 F 22q11.2 J7 X51755 [5] 30017-30054 X57808 [8]
M61770 [7]
IGLJ7*02 F 22q11.2 J7 D87017 [9]
IMGT notes:
  1. (1) Non-canonical DONOR-SPLICE (nat instead of ngt).
  2. (2) The IGLJ6 sequence from X51755 is not shown in the alignment of alleles since its sequence contains four typing errors (four deletions of 1 nucleotide: t7, g14, c18, g25, according to IMGT numbering for coding regions (Overview)).
  3. (3) The IGLJ1*01 gene and allele (including its J-RS) is part of the EX2 of the IGLL5*01 gene and allele (IGLL5 is a RPI gene that comprises three exons as identified in the X51755 and D87023 genomic sequences) (Gene and allele table: Human (Homo sapiens) IGLL)
IMGT references:
  1. [1] Chang, H. et al., J. Exp. Med., 163, 425-435 (1986). PMID:3003227
  2. [2] Dariavach, P. et al., Proc. Natl. Acad. Sci. USA, 84, 9074-9078 (1987). PMID:3122211
  3. [3] Udey, J.A. and Blomberg, B., Immunogenetics, 25, 63-70 (1987). PMID:3102359
  4. [4] Udey, J.A. and Blomberg, B., Nucleic Acids Res., 16, 2959-2969 (1988). PMID:3130611
  5. [5] Vasicek, T.J. and Leder, P., J. Exp. Med., 172, 609-620 (1990). PMID:2115572
  6. [6] Poul, M.A. et al., Nucleic Acids Res., 19, 4785-4785 (1991). PMID:1909788
  7. [7] Bauer, T.R. Jr and Blomberg, B., J. Immunol.146, 2813-2820 (1991). PMID:1901886
  8. [8] Combriato, G. and Klobeck, H.G., Eur. J. Immunol., 21, 1513-1522 (1991). PMID:1904362
  9. [9] Kawasaki, K. et al., Genome Res., 7, 250-261 (1997). PMID:9074928
  10. [10] Stiernholm, N.B et al., J. Immunol., 154 (9), 4583-4591 (1995). PMID:7722311
Created:
18/04/1997
Last updated:
22/09/2023
Authors:
Christèle Martinez-Jean