IMGT Repertoire (IG and TR)

Gene table: sheep (Ovis aries) TRDC

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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IMGT gene name IMGT allele name Fct Chromosomal
T Pr IMGT/LIGM-DB locus reference sequences IMGT/LIGM-DB sequences from the literature
Breed Clone names Exons Accession numbers Positions in the sequence Secondary accession numbers Breed Clone names Accession numbers Positions in the sequence
TRDC TRDC*01 F 7 Rambouillet CM008478.1 EX1 IMGT000048 MAP 2759323..2759601
EX2 IMGT000048 MAP 2760184..2760258
EX3 IMGT000048 MAP 2760626..2760739
EX4UTR (1) IMGT000048 MAP 2762144..2763059
TRDC*02 F 7 Texel TRDC*01 EX1 OviAri_1_chr7 [1] (2) MAP complement(206252..206530)
EX2 OviAri_1_chr7 [1] (2) MAP complement(205595..205669)
EX3 OviAri_1_chr7 [1] (2) MAP complement(205114..205227)
EX4UTR (1) OviAri_1_chr7 [1] (2) MAP complement(202794..203709)

MAP: Mapped reference sequences.

IMGT notes:
  1. (1) Since EX4 is untranslated, nucleotide differences observed in EX4 are not taken into account for the description of alleles
  2. (2) Sequence not in locus reference sequence (assembly Oar_rambouillet_v1.0)
IMGT references:
  1. [1] Piccinni B. et al., BMC Genomics, 16:709 (2015). PMID:26383271
Last updated:
Imène Chentli, Perrine Pégorier