IMGT Repertoire (IG and TR)
Locus in genome assembly: dog (Canis lupus familiaris) IGK locus
Dog (Canis lupus familiaris) IGK locus
| IMGT locus | IGK locus | IGK locus | IGK locus | IGK locus | IGK locus | IGK locus | IGK locus | IGK locus | IGK locus | IGK locus | IGK locus | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| IMGT locus ID: Canlupfam_IGK_1 | IMGT locus ID: Canlupfam_IGK_2 | IMGT locus ID: Canlupfam_IGK_3 | IMGT locus ID: Canlupfam_IGK_4 | IMGT locus ID: Canlupfam_IGK_5 | IMGT locus ID: Canlupfam_IGK_6 | IMGT locus ID: Canlupfam_IGK_7 | IMGT locus ID: Canlupfam_IGK_8 | IMGT locus ID: Canlupfam_IGK_9 | IMGT locus ID: Canlupfam_IGK_10 | IMGT locus ID: Canlupfam_IGK_11 | ||
| Taxonomy | Canis lupus familiaris (dog), taxon:9615, breed: Boxer | Canis lupus familiaris (dog), taxon:9615, breed: Basenji | Canis lupus familiaris (dog), taxon:9615, breed: Bernese Mountain Dog | Canis lupus familiaris (dog), taxon:9615, breed: Bernese Mountain Dog | Canis lupus familiaris (dog), taxon:9615, breed: Cairn Terrier | Canis lupus familiaris (dog), taxon:9615, breed: Basenji | Canis lupus familiaris (dog), taxon:9615, breed: Labrador retriever | Canis lupus familiaris (dog), taxon:9615, breed: Labrador retriever | Canis lupus familiaris (dog), taxon:9615, breed: Great Dane | Canis lupus familiaris (dog), taxon:9615, breed: German Shepherd | Canis lupus familiaris (dog), taxon:9615, breed: Boxer | |
| Genome assembly | CanFam3.1 | Basenji_breed-1.1 | BD_1.0 | OD_1.0 | CA611_1.0 | UNSW_CanFamBas_1.2 | ROS_Cfam_1.0 | Yella_v2 | UMICH_Zoey_3.1 | ASM864105v1 | Dog10K_Boxer_Tasha | |
| GenBank assembly ID | GCA_000002285.2 | GCA_004886185.2 | GCA_031010765.1 | GCA_031010635.1 | GCA_031010295.1 | GCA_013276365.2 | GCA_014441545.1 | GCA_031165255.1 | GCA_005444595.1 | GCA_008641055.3 | GCA_000002285.4 | |
| RefSeq assembly ID | GCF_000002285.3 | GCF_014441545.1 | GCF_005444595.1 (1) | GCF_000002285.5 | ||||||||
| BAC library | ||||||||||||
| Chromosome | 17 | 17 | 17 | 17 | 17 | 17 | 17 | 17 | 17 | 17 | 17 | |
| Chromosome sequence ID and locus positions (GenBank assembly) | CM000017.3 (37492784-37841916, complement) | CM016447.1 (37170283-37487682) | CM061978.1 (37366920-37725841) | CM061938.1 (37431753-37801132) | CM062017.1 (37376293-37674350) | CM023379.1 (37435210-37720703) | CM025116.1 (38243285-38517926) | CM062148.1 (37513406-37793075) | CM016585.1 (37378268-37684288) | CM018133.1 (38350332-38615225) | CM000017.4 (37235112-37470295) | |
| Chromosome sequence ID and locus positions (RefSeq assembly) | NC_006599.3 (37492784-37841916, complement) | NC_051821.1 (38243285-38517926) | NC_049277.1 (37378268-37684288) | NC_006596.4 (37235112-37470295) | ||||||||
| IMGT locus orientation on the chromosome | REV | FWD | FWD | FWD | FWD | FWD | FWD | FWD | FWD | FWD | FWD | |
| IMGT/LIGM-DB locus reference sequence (ID) | IMGT000002 [1] | IMGT000067 | IMGT000172 | IMGT000178 | IMGT000179 | IMGT000180 | IMGT000181 | IMGT000182 | IMGT000183 | IMGT000184 | IMGT000185 | |
| IMGT/LIGM-DB locus reference sequence length (bp) | 349133 | 317400 | 358922 | 369380 | 298058 | 285494 | 274642 | 279670 | 306021 | 264894 | 235184 |
IMGT notes:
- (1) RefSeq GCF_005444595.1 has been suppressed (2024).
IMGT references:
- [1] Martin J. et al. Immunogenetics 2018 Apr;70(4):223-236 (2018) Sep 19. doi: 10.1007/s00251-017-1028-0. Epub 2017 Sep 19. PMID:28924718
More information:
- Created:
- 09/08/2017
- Last updated:
- 06/09/2024
- Authors:
- Imène Chentli, Perrine Pégorier, Taismara Kustro Garnica
