IMGT Repertoire (IG and TR)
Locus in genome assembly: sheep (Ovis aries) TRA/TRD locus
Sheep (Ovis aries) TRA/TRD locus
| IMGT locus | TRA/TRD locus | TRA/TRD locus |
|---|---|---|
| IMGT locus ID: Oviari_TRA/TRD_2 | IMGT locus ID: Oviari_TRA/TRD_1 | |
| Taxonomy | Ovis aries (sheep), taxon:9940, breed: Rambouillet | Ovis aries (sheep), taxon:9940, breed: Texel |
| Genome assembly | Oar_rambouillet_v1.0 | Oar_v3.1 |
| GenBank assembly ID | GCA_002742125.1 | GCA_000298735.1 |
| RefSeq assembly ID | GCF_002742125.1 | GCF_000298735.1 |
| BAC library | ||
| Chromosome | 7 | 7 |
| Chromosome sequence ID and locus positions (GenBank assembly) | CM008478.1 (23556113-26437716, complement) | CM001588.1 (21754183-22955235) |
| Chromosome sequence ID and locus positions (RefSeq assembly) | NC_040258.1 (23556113-26437716, complement) | NC_019464.1 (21754183-22955235) |
| IMGT locus orientation on the chromosome | REV | REV |
| IMGT/LIGM-DB locus reference sequence (ID) | IMGT000048 | OviAri_1_chr7, OviAri_2_chr7 and OviAri_3_chr7 |
| IMGT/LIGM-DB locus reference sequence length (bp) | 2881604 | 400351, 400351 and 400351 |
More information:
- Gene table: sheep (Ovis aries) TRAV
- Gene table: sheep (Ovis aries) TRAJ
- Gene table: sheep (Ovis aries) TRAC
- Gene table: sheep (Ovis aries) TRDV
- Gene table: sheep (Ovis aries) TRDD
- Gene table: sheep (Ovis aries) TRDJ
- Gene table: sheep (Ovis aries) TRDC
- Potential germline repertoire: sheep (Ovis aries) TRAV and TRAJ genes on chromosome 7
- Potential germline repertoire: sheep (Ovis aries) TRDV, TRDD and TRDJ genes on chromosome 7
See also:
- Created:
- 07/06/2019
- Last updated:
- 22/09/2023
- Authors:
- Perrine Pégorier
