IMGT Repertoire (IG and TR)

✤ : NCBI accession number that correspond to a previously internal IMGT accession number. See the correspondence table.

IMGT notes: ↑

1. frameshift in V-REGION: insertion of 1 nt in FR2-IMGT
2. STOP-CODON in V-REGION: position 43
3. frameshift in V-REGION: deletion of 1 nt in FR2-IMGT
4. no INIT-CODON: Lys instead of Met, frameshift in L-PART1: insertion of 1 nt and deletion of 2 nt causing defectuous DONOR-SPLICE, frameshifts in V-REGION: several insertions and deletions
5. unexpected V-INTRON length, however this V-GENE has been found rearranged
6. frameshift in L-PART1: insertion of 1 nt causing defectuous DONOR-SPLICE
7. frameshifts in V-REGION: several insertions and deletions
8. frameshift in L-PART1
9. frameshift in L-PART1: deletion of 1 nt causing defectuous DONOR-SPLICE
10. frameshift in L-PART1 causing defectuous DONOR-SPLICE, noncanonical ACCEPTOR-SPLICE: naann instead of nagnn
11. unexpected V-INTRON length
12. STOP-CODON in L-PART1
13. no INIT-CODON: Val instead of Met, STOP-CODON in V-REGION: position 6, frameshift in V-REGION: insertion of 1 nt in FR1-IMGT
14. no L-PART1, frameshifts in V-REGION: several insertions and deletions
15. frameshifts in V-REGION: deletion of 1 nt and deletion of 5 nt in FR3-IMGT
16. noncanonical V-HEPTAMER: tgcagtg instead of cacagtg
17. frameshift in V-REGION: deletion of 5 nt in FR3-IMGT
18. frameshift in V-REGION: insertion of 1 nt in CDR1-IMGT
19. unexpected V-INTRON length, noncanonical V-NONAMER:acaaaaata instead of acacaaacc
20. unexpected V-INTRON length, noncanonical V-NONAMER: acaaaaata instead of acacaaacc
21. Sequence not in locus reference sequence (assembly Basenji_breed-1.1)

IMGT references: ↑

1. Edwards R.J. et al., Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome, bioRxiv (2020).
2. Eory L. et al., Long-read based genome assembly of a Labrador retriever dog, Unpublished.
3. Field M.A. et al., Draft de novo genome assembly of German Shepherd Dog (Canis lupus familiaris), Unpublished.
4. Jagannathan V. et al., Update the genome of boxer (canfam3) by PacBio, Unpublished.
5. Kidd J.M. et al., De novo assembly of a Great Dane genome, Unpublished.
6. Lindblad-Toh K. et al., Genome sequence, comparative analysis and haplotype structure of the domestic dog, Nature, vol. 438, no. 7069, 2005, pp. 803-819. PUBMED: 16341006
7. Manso,T. et al., IMGT(R) databases, related tools and web resources through three main axes of research and development, Nucleic Acids Res, vol. 50, no. D1, 2022, pp. D1262-D1272. PUBMED: 34875068
8. Schall P.Z. et al., Canine nanopore genome assemblies and genome wide methylation patterns, Unpublished.
9. Schall P.Z. et al., Genome-wide methylation patterns from canine nanopore assemblies, G3 (Bethesda) (2023).