Citing IMGT databases: Manso T. et al. IMGT® databases, related tools and web resources through three main axes of research and development. Nucleic Acids Res. 2022 Jan 7;50(D1):D1262-D1272. doi: 10.1093/nar/gkab1136 PMID: 34875068 Free PMC article.
Program version: v. 

Add the possibility to obtain a gene table per strain (for mouse now and for other species later) and allotypes/isotypes for human.
September 25th, 2024.

Bibliographical references in alphabetic order, small design changes and addition of "NL" for non-localized gene.
June 14th, 2024.

Addition of 'Score for IMGT allele confirmation' as well as NCBI TPA accession numbers.
September 20th, 2023.

Implementation of the dynamic gene table.

Gene table legend:

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene, when the data have been confirmed by several studies.

Functionality is shown in parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.

IMGT allele confirmation: a scoring system is employed to signify the frequency of occurrences of a specific allele within sequence data. A single star () indicates that no instances of the allele have been identified in the literature. Two stars () indicate the discovery of one literature sequence containing the allele. If more than one literature sequence is found to contain the allele, it is designated with three stars (). In the Excel file, the stars are represented by the plus symbol (+).

Click on:
  • IMGT gene name to get the corresponding IMGT/GENE-DB entry (link).
  • IMGT allele name to see the corresponding Alignments of alleles (link).
  • Accession number to get the corresponding IMGT/LIGM-DB entry (link).
  • MAP: mapped sequences. Click to access GENE-DB «LOCALIZATION IN GENOME ASSEMBLIES» (link).
  • [number] to access the corresponding IMGT reference (popover).
  • (number) to see the corresponding IMGT note (popover).
Options:
  • You can show/hide columns (), download data () or put the table in fullscreen () using buttons.
See also (IMGT Scientific chart):
Select a species and a IMGT group to get the gene table:
Only IMGT available species/group are shown in the drop-down list.
The gene table can take several seconds to appear, please be patient.
Gene table of dog (Canis lupus familiaris) TRAJ IMGT group:
IMGT gene nameIMGT allele nameScore for
IMGT allele
confirmation		FctChromosomosal
localization		R T PrIMGT/LIGM-DB reference sequencesIMGT/LIGM-DB sequences from the literature
Clone namesBreedAccession
numbers		Positions
in the sequence
(J-GENE-UNIT)
or J-REGION (*)		Secondary
accession
numbers		Clone namesBreedAccession
numbers		Positions
in the sequence
(J-GENE-UNIT)
or J-REGION (*)
TRAJ1 TRAJ1*01 P (1) 8 CM000008.3 boxer BK065026✤ [1,2] MAP 734935-735026
TRAJ2 TRAJ2*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 733761-733840
TRAJ3 TRAJ3*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 733218-733303
TRAJ4 TRAJ4*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 732243-732333
TRAJ5 TRAJ5*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 729402-729489
TRAJ6 TRAJ6*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 727996-728085
TRAJ7 TRAJ7*01 ORF (2) 8 CM000008.3 boxer BK065026✤ [1,2] MAP 726262-726348
TRAJ8 TRAJ8*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 724689-724776
TRAJ9 TRAJ9*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 724106-724188
TRAJ10 TRAJ10*01 ORF (3) 8 CM000008.3 boxer BK065026✤ [1,2] MAP 722193-722283
TRAJ11 TRAJ11*01 ORF (4) 8 CM000008.3 boxer BK065026✤ [1,2] MAP 721186-721273
TRAJ12 TRAJ12*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 720608-720695
TRAJ13 TRAJ13*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 719767-719855
TRAJ14 TRAJ14*01 P (5) 8 CM000008.3 boxer BK065026✤ [1,2] MAP 718566-718651
TRAJ15 TRAJ15*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 717818-717905
TRAJ16 TRAJ16*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 716669-716756
TRAJ17 TRAJ17*01 P (1) 8 CM000008.3 boxer BK065026✤ [1,2] MAP 715280-715366
TRAJ18 TRAJ18*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 714143-714236
TRAJ19 TRAJ19*01 ORF (6) 8 CM000008.3 boxer BK065026✤ [1,2] MAP 713752-713835
TRAJ20 TRAJ20*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 712772-712856
TRAJ21 TRAJ21*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 712041-712123
TRAJ22 TRAJ22*01 ORF (7) 8 CM000008.3 boxer BK065026✤ [1,2] MAP 710283-710368
TRAJ23 TRAJ23*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 708653-708743
TRAJ24 TRAJ24*01 ORF (8) 8 CM000008.3 boxer BK065026✤ [1,2] MAP 708218-708309
TRAJ25 TRAJ25*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 707357-707444
TRAJ26 TRAJ26*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 707019-707106
TRAJ27 TRAJ27*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 704856-704942
TRAJ28 TRAJ28*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 704213-704303
TRAJ29 TRAJ29*01 P (9) 8 CM000008.3 boxer BK065026✤ [1,2] MAP 703168-703284
TRAJ30 TRAJ30*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 702128-702214
TRAJ31 TRAJ31*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 700112-700196
TRAJ32 TRAJ32*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 698585-698676
TRAJ33 TRAJ33*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 697830-697914
TRAJ34 TRAJ34*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 697135-697220
TRAJ35 TRAJ35*01 ORF (10) 8 CM000008.3 boxer BK065026✤ [1,2] MAP 696204-696297
TRAJ36 TRAJ36*01 P (1) 8 CM000008.3 boxer BK065026✤ [1,2] MAP 694680-694784
TRAJ37 TRAJ37*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 693908-693997
TRAJ38 TRAJ38*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 692391-692480
TRAJ39 TRAJ39*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 691745-691835
TRAJ40 TRAJ40*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 689632-689720
TRAJ41 TRAJ41*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 687591-687680
TRAJ42 TRAJ42*01 F 8
R αT αPr αR δT δPr δ
++
 CM000008.3 boxer BK065026✤ [1,2] MAP 687081-687174
TRAJ43 TRAJ43*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 686253-686337
TRAJ44 TRAJ44*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 685158-685248
TRAJ45 TRAJ45*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 684046-684136
TRAJ46 TRAJ46*01 ORF (11) 8 CM000008.3 boxer BK065026✤ [1,2] MAP 683533-683623
TRAJ47 TRAJ47*01 P (1) 8 CM000008.3 boxer BK065026✤ [1,2] MAP 682945-683042
TRAJ48 TRAJ48*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 680957-681047
TRAJ49 TRAJ49*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 680151-680237
TRAJ50 TRAJ50*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 679313-679400
TRAJ52 TRAJ52*01 ORF (12) 8 CM000008.3 boxer BK065026✤ [1,2] MAP 676925-677021
TRAJ53 TRAJ53*01 ORF (13) 8 CM000008.3 boxer BK065026✤ [1,2] MAP 673958-674044
TRAJ54 TRAJ54*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 673310-673402
TRAJ56 TRAJ56*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 670536-670625
TRAJ57 TRAJ57*01 ORF (14) 8 CM000008.3 boxer BK065026✤ [1,2] MAP 669889-669979
TRAJ58 TRAJ58*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 668669-668759
TRAJ59 TRAJ59*01 ORF (15) 8 CM000008.3 boxer BK065026✤ [1,2] MAP 667521-667608
TRAJ60 TRAJ60*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 667278-667361
TRAJ61 TRAJ61*01 P (1) 8 CM000008.3 boxer BK065026✤ [1,2] MAP 666264-666361

✤ : NCBI accession number that correspond to a previously internal IMGT accession number. See the correspondence table.

IMGT notes: ↑
  1. Frameshift in J-REGION
  2. Noncanonical J-HEPTAMER: cagagcg instead of cacagtg
  3. Noncanonical J-HEPTAMER: cactatg instead of cactgtg
  4. Noncanonical J-HEPTAMER: tctggtg instead of tgtggtg
  5. In frame STOP-CODON in J-REGION
  6. Noncanonical J-HEPTAMER: tctagtc instead of tatagtg, unexpected J-SPACER length (10 nt instead of 12 nt)
  7. Non conserved consensus sequence, FGXG is replaced by FGXR, unexpected V-SPACER length (9 nt instead of 12 nt)
  8. Non conserved consensus sequence, FGXG is replaced by SGXG, noncanonical DONOR-SPLICE: nga instead of ngt
  9. Frameshift in J-REGION, non conserved consensus sequence, FGXG is replaced by FCXG
  10. non conserved consensus sequence, FGXG is replaced by FWXL
  11. Non conserved consensus sequence,FGXG is replaced by FGXR, noncanonical J-HEPTAMER: aacggtg instead of catggtg
  12. Noncanonical J-HEPTAMER: tgcggtg instead of tgtggtg
  13. Noncanonical J-HEPTAMER: gatggtg instead of gattgtg
  14. Non conserved consensus sequence, FGXG is replaced by FGXE
  15. Non conserved consensus sequence, FGXG is replaced by SGXR
IMGT references: ↑
  1. Manso,T. et al., IMGT(R) databases, related tools and web resources through three main axes of research and development, Nucleic Acids Res, vol. 50, no. D1, 2022, pp. D1262-D1272. PUBMED: 34875068
  2. Martin J. et al., Comprehensive annotation and evolutionary insights into the canine (Canis lupus familiaris) antigen receptor loci, Immunogenetics, vol. 70, no. 4, 2018, pp. 223-236. PUBMED: 28924718