Citing IMGT databases: Manso T. et al. IMGT® databases, related tools and web resources through three main axes of research and development. Nucleic Acids Res. 2022 Jan 7;50(D1):D1262-D1272. doi: 10.1093/nar/gkab1136 PMID: 34875068 Free PMC article.
Program version: v. 

Add the possibility to obtain a gene table per strain (for mouse now and for other species later) and allotypes/isotypes for human.
September 25th, 2024.

Bibliographical references in alphabetic order, small design changes and addition of "NL" for non-localized gene.
June 14th, 2024.

Addition of 'Score for IMGT allele confirmation' as well as NCBI TPA accession numbers.
September 20th, 2023.

Implementation of the dynamic gene table.

Gene table legend:

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene, when the data have been confirmed by several studies.

Functionality is shown in parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.

IMGT allele confirmation: a scoring system is employed to signify the frequency of occurrences of a specific allele within sequence data. A single star () indicates that no instances of the allele have been identified in the literature. Two stars () indicate the discovery of one literature sequence containing the allele. If more than one literature sequence is found to contain the allele, it is designated with three stars (). In the Excel file, the stars are represented by the plus symbol (+).

Click on:
  • IMGT gene name to get the corresponding IMGT/GENE-DB entry (link).
  • IMGT allele name to see the corresponding Alignments of alleles (link).
  • Accession number to get the corresponding IMGT/LIGM-DB entry (link).
  • MAP: mapped sequences. Click to access GENE-DB «LOCALIZATION IN GENOME ASSEMBLIES» (link).
  • [number] to access the corresponding IMGT reference (popover).
  • (number) to see the corresponding IMGT note (popover).
Options:
  • You can show/hide columns (), download data () or put the table in fullscreen () using buttons.
See also (IMGT Scientific chart):
Select a species and a IMGT group to get the gene table:
Only IMGT available species/group are shown in the drop-down list.
The gene table can take several seconds to appear, please be patient.

Due to the poor quality of the Btau3.1 assembly, only clearly identified genes by comparison to IMGT000049 (ARS-UCD1.2 assembly) are annotated. Moreover some duplications such as TRAV4 in Btau3.1_ChrUn.139, TRAV24-6 in Btau3.1_ChrUn.2578, TRAV9-1, TRAV13-1 and TRAV12-2 in Btau3.1_ChrUn.298 and TRAV5, TRAV6, TRAV9-4, TRAV9-5, TRAV9-6, TRAV13-3, TRAV13-4, TRAV14-3, TRAV14-4 and TRAV43-3 in Btau3.1_ChrUn.41 may result from assemblies errors.
Owing to the difficulties linked to the assemblies, IMGT genes and alleles assignment was not done to previous annotations of the bovine TRA/TRD locus [3,4], made from Btau4.0 and UMD3.1 assemblies, respectively.

This annotation was based on the following articles:

Gene table of bovine (Bos taurus) TRAV IMGT group:
IMGT sub­groupIMGT gene nameIMGT allele nameScore for
IMGT allele
confirmation		FctChromosomosal
localization		R T PrIMGT/LIGM-DB reference sequencesIMGT/LIGM-DB sequences from the literature
Clone namesBreedAccession
numbers		Positions
in the sequence
(L-V-GENE-UNIT)
or V-REGION (*)		Secondary
accession
numbers		Clone namesBreedAccession
numbers		Positions
in the sequence
(L-V-GENE-UNIT)
or V-REGION (*)
TRAV1TRAV1 TRAV1*01 F 10
R αT αPr αR δT δPr δ
++
 CM008177.2 Hereford BK064707✤ [3,4] MAP 10001-10667 Hereford Btau3.1_Chr10.28 [2] (83) complement(534682-535348)
TRAV2TRAV2-1 TRAV2-1*01 F 10
R αT αPr αR δT δPr δ
++
 CM008177.2 Hereford BK064707✤ [3,4] MAP 84032-84522 Hereford Btau3.1_Chr10.28 [2] (83) complement(460821-461311)
TRAV2TRAV2-2 TRAV2-2*01 F 10
R αT αPr αR δT δPr δ
++
 CM008177.2 Hereford BK064707✤ [3,4] MAP 101406-101889 Hereford Btau3.1_Chr10.28 [2] (83) complement(443453-443936)
TRAV2TRAV2-3 TRAV2-3*01 P (1) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 122906-123400 Hereford Btau3.1_Chr10.28 [2] (83) complement(421944-422438)
TRAV2TRAV2-4 TRAV2-4*01 P (2) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 141947-142435 Hereford Btau3.1_Chr10.28 [2] (83) complement(402907-403395)
TRAV2TRAV2-5 TRAV2-5*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 164003-164493 Hereford Btau3.1_Chr10.28 [2] (83) complement(380935-381425)
TRAV2TRAV2-6 TRAV2-6*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 189456-189944 Hereford Btau3.1_Chr10.28 [2] (83) complement(355481-355969)
TRAV2TRAV2-7 TRAV2-7*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 216945-217433 Hereford Btau3.1_Chr10.28 [2] (83) complement(327986-328474)
TRAV3TRAV3-1 TRAV3-1*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 91077-91543 Hereford Btau3.1_Chr10.28 [2] (83) complement(453800-454266)
TRAV3TRAV3-2 TRAV3-2*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 108247-108713 Hereford Btau3.1_Chr10.28 [2] (83) complement(436629-437095)
TRAV3TRAV3-3 TRAV3-3*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 130221-130692
TRAV3TRAV3-3 TRAV3-3*02 P (3) 10 Hereford Btau3.1_Chr10.28 [2] (83,84) complement(414650-415123)
TRAV3TRAV3-4 TRAV3-4*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 149038-149504 Hereford Btau3.1_Chr10.28 [2] (83) complement(395924-396390)
TRAV3TRAV3-5 TRAV3-5*01 F 10
R αT αPr αR δT δPr δ
++
 CM008177.2 Hereford BK064707✤ [3,4] MAP 171015-171486 Hereford Btau3.1_Chr10.28 [2] (83) complement(373942-374413)
TRAV3TRAV3-6 TRAV3-6*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 198544-199015 Hereford Btau3.1_Chr10.28 [2] (83) complement(346409-346880)
TRAV3TRAV3-7 TRAV3-7*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 222300-222771 Hereford Btau3.1_Chr10.28 [2] (83) complement(322648-323119)
TRAV4TRAV4 TRAV4*01 P (4) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 471723-471999 * Hereford Btau3.1_ChrUn.139 [2] (83) 22058-22334 *
TRAV5TRAV5 TRAV5*01 F 10
R αT αPr αR δT δPr δ
++
 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2852338-2852888) Hereford Btau3.1_ChrUn.41 [2] (83) complement(601337-601887)
TRAV5TRAV5 TRAV5*02 F 10 Hereford Btau3.1_ChrUn.129 [2] (83,84) 26193-26745 Hereford Btau3.1_ChrUn.41 [2] (83) 327342-327894
Hereford Btau3.1_ChrUn.857 [2] (83) 93907-94459
TRAV5TRAV5 TRAV5*03 F 10 Hereford Btau3.1_ChrUn.41 [2] (83,84) complement(144975-145527)
TRAV6TRAV6 TRAV6*01 P (5) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2843182-2843734) Hereford Btau3.1_ChrUn.41 [2] (83) complement(135797-136349)
TRAV6TRAV6 TRAV6*02 P (5) 10 Hereford Btau3.1_ChrUn.857 [2] (83,84) 103077-103629
TRAV8TRAV8-1 TRAV8-1*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 317292-317780
TRAV8TRAV8-1 TRAV8-1*02 F 10 Hereford Btau3.1_Chr10.28 [2] (83,84) complement(265567-266055) Hereford Btau3.1_ChrUn.129 [2] (83) 282060-282548
TRAV8TRAV8-1 TRAV8-1*03 F 10
R αT αPr αR δT δPr δ
++
 Hereford Btau3.1_ChrUn.298 [2] (83,84) 11006-11494
TRAV8TRAV8-2 TRAV8-2*01 P (6) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 433950-434425
TRAV8TRAV8-3 TRAV8-3*01 P (6) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 1913633-1914113
TRAV8TRAV8-3 TRAV8-3*02 P (6) 10 Hereford Btau3.1_ChrUn.1227 [2] (83,84) complement(52252-52732)
TRAV8TRAV8-3 TRAV8-3*03 P (6) 10 Hereford Btau3.1_ChrUn.2188 [2] (83,84) 21609-22089
TRAV8TRAV8-4 TRAV8-4*01 P (1) 10
R αT αPr αR δT δPr δ
+
 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2318915-2319419) AY227782 [1] 97999-98503
TRAV8TRAV8-5 TRAV8-5*01 P (7) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2337645-2338125)
TRAV9TRAV9-1 TRAV9-1*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 480956-481458
TRAV9TRAV9-1 TRAV9-1*02 F 10 Hereford Btau3.1_ChrUn.139 [2] (83,84) 31296-31798 Hereford Btau3.1_ChrUn.298 [2] (83) complement(70182-70684)
TRAV9TRAV9-1 TRAV9-1*03 F 10 Hereford Btau3.1_ChrUn.298 [2] (83,84) 72137-72640
TRAV9TRAV9-2 TRAV9-2*01 P (8) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2591336-2591833) Hereford Btau3.1_ChrUn.221 [2] (83) complement(131192-131689)
TRAV9TRAV9-3 TRAV9-3*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2613911-2614412) Hereford Btau3.1_ChrUn.221 [2] (83) complement(153312-153813)
TRAV9TRAV9-4 TRAV9-4*01 P (9) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2789726-2790221) Hereford Btau3.1_ChrUn.41 [2] (83,85) 390437-390931
TRAV9TRAV9-5 TRAV9-5*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2808799-2809298) Hereford Btau3.1_ChrUn.41 [2] (83) complement(100664-101163)
TRAV9TRAV9-6 TRAV9-6*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2835335-2835839)
TRAV9TRAV9-6 TRAV9-6*02 F 10 Hereford Btau3.1_ChrUn.41 [2] (83,84) complement(127931-128435) Hereford Btau3.1_ChrUn.857 [2] (83) 110156-110660
TRAV10TRAV10-1 TRAV10-1*01 P (10) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 491414->491602 * Hereford Btau3.1_ChrUn.139 [2] (83) 41759->41947 *
TRAV10TRAV10-2 TRAV10-2*01 P (11) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2586300-2586909) Hereford Btau3.1_ChrUn.221 [2] (83) complement(126154-126763)
TRAV10TRAV10-3 TRAV10-3*01 ORF (12) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2784619-2785228) Hereford Btau3.1_ChrUn.41 [2] (83) 395430-396039
TRAV11TRAV11-1 TRAV11-1*01 P (13) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 492368-492938 Hereford Btau3.1_ChrUn.139 [2] (83) 42713-43283
TRAV11TRAV11-2 TRAV11-2*01 P (14) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2584138-2585355) Hereford Btau3.1_ChrUn.221 [2] (83) complement(123992-125209)
TRAV11TRAV11-3 TRAV11-3*01 P (15) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2783093-2783666) Hereford Btau3.1_ChrUn.41 [2] (83) 396992-397565
TRAV12TRAV12-1 TRAV12-1*01 F 10
R αT αPr αR δT δPr δ
++
 CM008177.2 Hereford BK064707✤ [3,4] MAP 504962-505549
TRAV12TRAV12-2 TRAV12-2*01 P (1) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2571727-2572313)
TRAV12TRAV12-2 TRAV12-2*02 F 10 Hereford Btau3.1_ChrUn.221 [2] (83,84) complement(111556-112147)
TRAV12TRAV12-2 TRAV12-2*03 F 10 Hereford Btau3.1_ChrUn.298 [2] (83,84) 107579-108166
TRAV12TRAV12-3 TRAV12-3*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2773481-2774073) Hereford Btau3.1_ChrUn.41 [2] (83) 406607-407199
TRAV13TRAV13-1 TRAV13-1*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 485559-486105 Hereford Btau3.1_ChrUn.139 [2] (83) 35903-36449
Hereford Btau3.1_ChrUn.298 [2] (83) 82256-82802
TRAV13TRAV13-1 TRAV13-1*02 F 10 Hereford Btau3.1_ChrUn.298 [2] (83,84) 76776-77322
TRAV13TRAV13-2 TRAV13-2*01 P (16) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2603842-2604391) Hereford Btau3.1_ChrUn.221 [2] (83) complement(143206-143755)
TRAV13TRAV13-3 TRAV13-3*01 P (17) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2801969-2802510)
TRAV13TRAV13-3 TRAV13-3*02 P (18) 10 Hereford Btau3.1_ChrUn.41 [2] (83,84) complement(93806-94352)
TRAV13TRAV13-3 TRAV13-3*03 P (18) 10 Hereford Btau3.1_ChrUn.41 [2] (83,84) 378476-379017
TRAV13TRAV13-4 TRAV13-4*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2831669-2832207) Hereford Btau3.1_ChrUn.41 [2] (83) complement(123364-123903)
Hereford Btau3.1_ChrUn.857 [2] (83) 114688-115227
TRAV13TRAV13-4 TRAV13-4*02 F 10 Hereford Btau3.1_ChrUn.41 [2] (83,84) 348962-349501
TRAV14TRAV14-1 TRAV14-1*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2599598-2600145)
TRAV14TRAV14-2 TRAV14-2*01 P (17) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2633448-2634567) Hereford Btau3.1_ChrUn.221 [2] (83) complement(193985-195104)
TRAV14TRAV14-3 TRAV14-3*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2798254-2798801) Hereford Btau3.1_ChrUn.41 [2] (83) 382181-382728
TRAV14TRAV14-3 TRAV14-3*02 P (19) 10 Hereford Btau3.1_ChrUn.129 [2] (83,84) 113937-114480
TRAV14TRAV14-3 TRAV14-3*03 F 10 Hereford Btau3.1_ChrUn.41 [2] (83,84) complement(90090-90637)
TRAV14TRAV14-4 TRAV14-4*01 ORF (20) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2826272-2827393)
TRAV14TRAV14-4 TRAV14-4*02 ORF (20) 10 Hereford Btau3.1_ChrUn.41 [2] (83,84) complement(117956-119086) Hereford Btau3.1_ChrUn.857 [2] (83) 119505-120635
TRAV16TRAV16 TRAV16*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 523406-523887 Hereford Btau3.1_ChrUn.221 [2] (83) complement(335248-335729)
TRAV17TRAV17-1 TRAV17-1*01 P (21) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 529167-529954 Hereford Btau3.1_ChrUn.221 [2] (83) complement(329180-329967)
TRAV17TRAV17-2 TRAV17-2*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2311425-2312215)
TRAV17TRAV17-2 TRAV17-2*02 F 10
R αT αPr αR δT δPr δ
++
 Hereford Btau3.1_ChrUn.41 [2] (83,84) complement(14526-15316)
TRAV17TRAV17-3 TRAV17-3*01 P (13) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2763457-2764245) Hereford Btau3.1_ChrUn.41 [2] F (83,86) 416435-417225
TRAV18TRAV18-1 TRAV18-1*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 542353-542866 Hereford Btau3.1_ChrUn.129 [2] (83) 215777-216290
TRAV18TRAV18-1 TRAV18-1*02 ORF (22) 10 Hereford Btau3.1_ChrUn.221 [2] (83,84) complement(316139-316653)
TRAV18TRAV18-1 TRAV18-1*03 F 10 Hereford Btau3.1_ChrUn.298 [2] (83,84) 134738-135258
TRAV18TRAV18-2 TRAV18-2*01 ORF (22) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 588352-588866
TRAV18TRAV18-3 TRAV18-3*01 P (23) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2300116-2300628)
TRAV18TRAV18-3 TRAV18-3*02 P (23) 10 Hereford Btau3.1_ChrUn.41 [2] (83,84) complement(3231-3743)
TRAV18TRAV18-4 TRAV18-4*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2550805-2551325) Hereford Btau3.1_ChrUn.221 [2] (83) complement(90298-90818)
TRAV18TRAV18-5 TRAV18-5*01 ORF (22) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2751808-2752329) Hereford Btau3.1_ChrUn.41 [2] (83) 428357-428878
TRAV19TRAV19-1 TRAV19-1*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 252152-252782
TRAV19TRAV19-2 TRAV19-2*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 292463-293110 Hereford Btau3.1_Chr10.28 [2] (83) complement(291965-292612)
TRAV19TRAV19-3 TRAV19-3*01 P (24) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 631666-632300 Hereford Btau3.1_ChrUn.139 [2] F (83,86) 288370-289003
TRAV19TRAV19-3 TRAV19-3*02 F 10
R αT αPr αR δT δPr δ
++
 Hereford Btau3.1_ChrUn.129 [2] (83,84) 256770-257400
TRAV19TRAV19-3 TRAV19-3*03 ORF (25) 10 Hereford Btau3.1_ChrUn.298 [2] (83,84) 170038-170672
TRAV19TRAV19-4 TRAV19-4*01 P (26) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2526705-2527361)
TRAV19TRAV19-4 TRAV19-4*02 P (16) 10 Hereford Btau3.1_ChrUn.221 [2] (83,84) complement(65255-65956)
TRAV20TRAV20-1 TRAV20-1*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 260504-261040
TRAV20TRAV20-1 TRAV20-1*02 F 10 Hereford Btau3.1_ChrUn.129 [2] (83,84) 265889-266424
TRAV20TRAV20-2 TRAV20-2*01 P (27) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 280619-280878 *
TRAV20TRAV20-3 TRAV20-3*01 F 10
R αT αPr αR δT δPr δ
++
 CM008177.2 Hereford BK064707✤ [3,4] MAP 300830-301363 Hereford Btau3.1_Chr10.28 [2] (83) complement(283707-284240)
TRAV20TRAV20-4 TRAV20-4*01 ORF (28) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2518379-2518920) Hereford Btau3.1_ChrUn.221 [2] (83) complement(56922-57463)
TRAV21TRAV21-1 TRAV21-1*01 ORF (29) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 268476-269049
TRAV21TRAV21-2 TRAV21-2*01 P (30) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 288414-289004
TRAV21TRAV21-3 TRAV21-3*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 308831-309402
TRAV21TRAV21-3 TRAV21-3*02 F 10 Hereford Btau3.1_Chr10.28 [2] (83,84) complement(275668-276241)
TRAV21TRAV21-3 TRAV21-3*03 F 10 Hereford Btau3.1_ChrUn.129 [2] (83,84) 273766-274337 Hereford Btau3.1_ChrUn.298 [2] (83) 2517-3088
TRAV21TRAV21-4 TRAV21-4*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2510059-2510631) Hereford Btau3.1_ChrUn.221 [2] (83) complement(48601-49173)
TRAV22TRAV22-1 TRAV22-1*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 321637-322194
TRAV22TRAV22-1 TRAV22-1*02 ORF (31) 10 Hereford Btau3.1_Chr10.28 [2] (83,84) complement(261146-261703) Hereford Btau3.1_ChrUn.298 [2] (83) 15371-15928
TRAV22TRAV22-1 TRAV22-1*03 F 10 Hereford Btau3.1_ChrUn.129 [2] (83,84) 286419-286976
TRAV22TRAV22-2 TRAV22-2*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 374665-375222 Hereford Btau3.1_Chr10.28 [2] (83) complement(204855-205412)
TRAV22TRAV22-3 TRAV22-3*01 ORF (32) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 434798-435364
TRAV22TRAV22-4 TRAV22-4*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 659443-660003 Hereford Btau3.1_ChrUn.139 [2] (83) 327169-327729
TRAV22TRAV22-5 TRAV22-5*01 P (33) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 675468->675653 *
TRAV22TRAV22-5 TRAV22-5*02 P (33) 10 Hereford Btau3.1_ChrUn.139 [2] (83,84) 346703->346888 *
TRAV22TRAV22-6 TRAV22-6*01 P (34) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 1834670-1835230 Hereford Btau3.1_ChrUn.298 [2] (83) 240521-241081
TRAV22TRAV22-7 TRAV22-7*01 P (35) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 1914486-1915042
TRAV22TRAV22-7 TRAV22-7*02 F 10 Hereford Btau3.1_ChrUn.1227 [2] (83,84) complement(51323-51879)
TRAV22TRAV22-7 TRAV22-7*03 P (35) 10 Hereford Btau3.1_ChrUn.2188 [2] (83,84) 22462-23017
TRAV22TRAV22-8 TRAV22-8*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 2188110-2188687 Hereford Btau3.1_ChrUn.158 [2] (83) complement(221525-222102)
TRAV22TRAV22-9 TRAV22-9*01 P (36) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 2241729-2242289 Hereford Btau3.1_ChrUn.158 [2] (83) complement(168620-169180)
TRAV22TRAV22-9 TRAV22-9*02 P (36) 10 Hereford Btau3.1_ChrUn.129 [2] (83,84) 438033-438592
TRAV22TRAV22-10 TRAV22-10*01 ORF (37) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 2267026-2267563
TRAV22TRAV22-11 TRAV22-11*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2336705-2337271)
TRAV22TRAV22-12 TRAV22-12*01 P (38) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2457570-2458105) Hereford Btau3.1_ChrUn.41 [2] (83) complement(171994-172529)
TRAV22TRAV22-13 TRAV22-13*01 P (34) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2484486-2485028) Hereford Btau3.1_ChrUn.221 [2] (83) complement(17101-17643)
TRAV22TRAV22-14 TRAV22-14*01 F 10
R αT αPr αR δT δPr δ
++
 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2642348-2642918) Hereford Btau3.1_ChrUn.129 [2] (83) 377444-378015
TRAV22TRAV22-14 TRAV22-14*02 F 10 Hereford Btau3.1_ChrUn.221 [2] (83,84) complement(202897-203467)
TRAV22TRAV22-15 TRAV22-15*01 ORF (39) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2669926-2670504) Hereford Btau3.1_ChrUn.221 [2] (83) complement(230782-231360)
Hereford Btau3.1_ChrUn.2578 [2] (83) complement(21752-22330)
TRAV22TRAV22-16 TRAV22-16*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2686535-2687095) Hereford Btau3.1_ChrUn.221 [2] (83) complement(247295-247855)
TRAV23TRAV23-1 TRAV23-1*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 330174-330719
TRAV23TRAV23-1 TRAV23-1*02 F 10 Hereford Btau3.1_Chr10.28 [2] (83,84) complement(252136-252681)
TRAV23TRAV23-2 TRAV23-2*01 P (40) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 660641-661188 Hereford Btau3.1_ChrUn.139 [2] (83) 328375-328922
TRAV23TRAV23-3 TRAV23-3*01 P (41) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 680342-680883 Hereford Btau3.1_ChrUn.139 [2] (83) 351571-352112
TRAV23TRAV23-4 TRAV23-4*01 P (42) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP <720239-720415 *
TRAV23TRAV23-4 TRAV23-4*02 P (42) 10 Hereford Btau3.1_ChrUn.41 [2] (83,84) <625400-625576 *
TRAV23TRAV23-5 TRAV23-5*01 P (43) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 1835882-1836419
TRAV23TRAV23-6 TRAV23-6*01 P (44) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 2167830-2168406
TRAV23TRAV23-6 TRAV23-6*02 P (45) 10 Hereford Btau3.1_ChrUn.158 [2] (83,84) complement(241805-242382)
TRAV23TRAV23-7 TRAV23-7*01 P (46) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 2194711-2195251
TRAV23TRAV23-7 TRAV23-7*02 P (47) 10 Hereford Btau3.1_ChrUn.158 [2] (83,84) complement(214593-215135)
TRAV23TRAV23-8 TRAV23-8*01 P (48) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 2242941-2243481 Hereford Btau3.1_ChrUn.129 [2] (83) 439244-439791
TRAV23TRAV23-8D TRAV23-8D*01 ORF (49) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 2268214-2268754
TRAV23TRAV23-8D TRAV23-8D*02 P (48) 10 Hereford Btau3.1_ChrUn.158 [2] (83,84) complement(167428-167968)
TRAV23TRAV23-9 TRAV23-9*01 P (50) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2435713-2436255) Hereford Btau3.1_ChrUn.41 [2] (83) 244310-244852
TRAV23TRAV23-10 TRAV23-10*01 P (51) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2456375-2456920) Hereford Btau3.1_ChrUn.41 [2] (83) complement(170799-171344)
TRAV23TRAV23-11 TRAV23-11*01 ORF (49) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2483295-2483835)
TRAV23TRAV23-11 TRAV23-11*02 P (52) 10 Hereford Btau3.1_ChrUn.221 [2] (83,84) complement(15912-16452)
TRAV23TRAV23-12 TRAV23-12*01 P (44) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2664639-2665199)
TRAV23TRAV23-12 TRAV23-12*02 P (44) 10 Hereford Btau3.1_ChrUn.221 [2] (83,84) complement(225478-226039) Hereford Btau3.1_ChrUn.2578 [2] (83) complement(16464-17025)
TRAV24TRAV24-1 TRAV24-1*01 P (53) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 743401-743947 Hereford Btau3.1_ChrUn.41 [2] (83) 648491-649037
TRAV24TRAV24-1D TRAV24-1D*01 P (53) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2389705-2390251) Hereford Btau3.1_ChrUn.41 [2] (83) 299983-300529
TRAV24TRAV24-2 TRAV24-2*01 ORF (22) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 1863764-1864310 Hereford Btau3.1_ChrUn.298 [2] (83) 273169-273715
TRAV24TRAV24-2 TRAV24-2*02 F 10 Hereford Btau3.1_ChrUn.139 [2] (83,84) 397805-398351
TRAV24TRAV24-3 TRAV24-3*01 P (17) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 2182877-2184023
TRAV24TRAV24-4 TRAV24-4*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 2284963-2285510
TRAV24TRAV24-5 TRAV24-5*01 P (17) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2647663-2648204) Hereford Btau3.1_ChrUn.129 [2] (83) 372126-372668
TRAV24TRAV24-5 TRAV24-5*02 P (17) 10 Hereford Btau3.1_ChrUn.221 [2] (83,84) complement(208247-208788)
TRAV24TRAV24-6 TRAV24-6*01 P (54) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2674571-2674847) * Hereford Btau3.1_ChrUn.129 [2] (83) 337265-337541 *
Hereford Btau3.1_ChrUn.2578 [2] (83) 866-1142 *
TRAV24TRAV24-6 TRAV24-6*02 P (55) 10 Hereford Btau3.1_ChrUn.221 [2] (83,84) complement(235447->235690) * Hereford Btau3.1_ChrUn.2578 [2] (83) complement(26403->26646) *
TRAV25TRAV25-1 TRAV25-1*01 F 10
R αT αPr αR δT δPr δ
++
 CM008177.2 Hereford BK064707✤ [3,4] MAP 357902-358535 Hereford Btau3.1_Chr10.28 [2] (83) complement(221848-222481)
TRAV25TRAV25-2 TRAV25-2*01 P (53) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 640808-641438
TRAV25TRAV25-3 TRAV25-3*01 P (56) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 749703-750333 Hereford Btau3.1_ChrUn.41 [2] (83) 654796-655426
TRAV25TRAV25-3D TRAV25-3D*01 P (56) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2383317-2383947) Hereford Btau3.1_ChrUn.41 [2] (83) 306294-306924
TRAV25TRAV25-4 TRAV25-4*01 F 10
R αT αPr αR δT δPr δ
++
 CM008177.2 Hereford BK064707✤ [3,4] MAP 1811128-1811760 Hereford Btau3.1_ChrUn.139 [2] (83) 297173-297802
TRAV25TRAV25-5 TRAV25-5*01 P (57) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 1874620-1875249 Hereford Btau3.1_ChrUn.298 [2] (83) 286797-287426
TRAV25TRAV25-6 TRAV25-6*01 P (18) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 1936569-1937198
TRAV25TRAV25-7 TRAV25-7*01 P (58) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 1944748-1945348
TRAV25TRAV25-8 TRAV25-8*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 1953029-1953660
TRAV25TRAV25-8 TRAV25-8*02 F 10 Hereford Btau3.1_ChrUn.1227 [2] (83,84) complement(29157-29788)
TRAV25TRAV25-9 TRAV25-9*01 P (59) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 2224504-2225125 Hereford Btau3.1_ChrUn.158 [2] (83) complement(185784-186405)
TRAV25TRAV25-10 TRAV25-10*01 P (60) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 2244899-2245526
TRAV25TRAV25-11 TRAV25-11*01 P (56) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 2293399-2294029
TRAV25TRAV25-12 TRAV25-12*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2479983-2480616)
TRAV25TRAV25-12 TRAV25-12*02 P (17) 10 Hereford Btau3.1_ChrUn.221 [2] (83,84) complement(12682-13314)
TRAV25TRAV25-13 TRAV25-13*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2503895-2504513) Hereford Btau3.1_ChrUn.221 [2] (83) complement(36589-37203)
TRAV25TRAV25-13 TRAV25-13*02 F 10 Hereford Btau3.1_ChrUn.41 [2] (83,84) 513515-514137
TRAV25TRAV25-14 TRAV25-14*01 ORF (61) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2696582-2697215) Hereford Btau3.1_ChrUn.41 [2] (83) 486772-487405
Hereford Btau3.1_ChrUn.221 [2] (83) complement(257349-257982)
Hereford Btau3.1_ChrUn.3458 [2] (83) complement(9041-9674)
TRAV26TRAV26 TRAV26*01 P (62) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 2024329-2024602 *
TRAV26TRAV26 TRAV26*02 P (63) 10 Hereford Btau3.1_ChrUn.158 [2] (83,84) complement(369026-369302) *
TRAV26TRAV26 TRAV26*03 P (62) 10 Hereford Btau3.1_ChrUn.1907 [2] (83,84) 7451-7727 *
TRAV27TRAV27 TRAV27*01 P (64) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 1978338-1978926
TRAV27TRAV27 TRAV27*02 ORF (65) 10 Hereford Btau3.1_ChrUn.158 [2] (83,84) complement(408318-408905)
TRAV28TRAV28-1 TRAV28-1*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 1988246-1988845
TRAV28TRAV28-1 TRAV28-1*02 F 10 Hereford Btau3.1_ChrUn.158 [2] (83,84) complement(398413-399012)
TRAV28TRAV28-2 TRAV28-2*01 P (42) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP <2041403->2041526 * Hereford Btau3.1_ChrUn.1948 [2] (83) <867->990 *
TRAV28TRAV28-3 TRAV28-3*01 F 10
R αT αPr αR δT δPr δ
++
 CM008177.2 Hereford BK064707✤ [3,4] MAP 2042013-2042605 Hereford Btau3.1_ChrUn.158 [2] (83) complement(354775-355367)
TRAV28TRAV28-3 TRAV28-3*02 F 10 Hereford Btau3.1_ChrUn.1907 [2] (83,84) 34147-34739 Hereford Btau3.1_ChrUn.1948 [2] (83) 1479-2071
TRAV29TRAV29-1 TRAV29-1*01 ORF (66) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 1996493-1997064 Hereford Btau3.1_ChrUn.158 [2] (83) complement(388708-389279)
TRAV29TRAV29-2 TRAV29-2*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 2048229-2048794
TRAV29TRAV29-2 TRAV29-2*02 F 10 Hereford Btau3.1_ChrUn.158 [2] (83,84) complement(348772-349343) Hereford Btau3.1_ChrUn.1948 [2] (83) 7795-8366
TRAV29TRAV29-2 TRAV29-2*03 F 10
RTPr
++
 Hereford Btau3.1_ChrUn.1907 [2] (83,84) 40477-41048
TRAV33TRAV33-1 TRAV33-1*01 P (67) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 2004781-2005371 Hereford Btau3.1_ChrUn.158 [2] (83) complement(380387-380977)
TRAV33TRAV33-2 TRAV33-2*01 P (17) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 2037406-2038891
TRAV33TRAV33-2 TRAV33-2*02 P (17) 10 Hereford Btau3.1_ChrUn.158 [2] (83,84) complement(358493-359981)
TRAV33TRAV33-3 TRAV33-3*01 P (36) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 2051734-2052289
TRAV33TRAV33-3 TRAV33-3*02 F 10 TRDV2S1*01 Hereford Btau3.1_ChrUn.158 [2] (83,84) complement(345101-345657)
TRAV33TRAV33-3 TRAV33-3*03 F 10 TRDV2S2*01 Hereford Btau3.1_ChrUn.1907 [2] (83,84) 43992-44548
TRAV33TRAV33-3 TRAV33-3*04 F 10
R αT αPr αR δT δPr δ
++
 TRDV2S3*01 Hereford Btau3.1_ChrUn.1948 [2] (83,84) 11302-11858
TRAV34TRAV34-1 TRAV34-1*01 P (68) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 2028117-2028388 * Hereford Btau3.1_ChrUn.1907 [2] (83) 10523-10794 *
TRAV34TRAV34-1 TRAV34-1*02 P (68) 10 Hereford Btau3.1_ChrUn.158 [2] (83,84) complement(365986-366257) *
TRAV34TRAV34-2 TRAV34-2*01 P (69) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 2071349-2072010
TRAV34TRAV34-2 TRAV34-2*02 P (69) 10 Hereford Btau3.1_ChrUn.1948 [2] (83,84) 22935-23599
TRAV35TRAV35-1 TRAV35-1*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 2084690-2085319 Hereford Btau3.1_ChrUn.158 [2] (83) complement(330499-331128)
TRAV35TRAV35-2 TRAV35-2*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 2875852-2876481
TRAV36TRAV36-1 TRAV36-1*01 P (35) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 2092533-2093116 Hereford Btau3.1_ChrUn.158 [2] (83) complement(324490-325074)
Hereford Btau3.1_ChrUn.1002 [2] (83) 91089-91672
TRAV36TRAV36-2 TRAV36-2*01 F 10
R αT αPr αR δT δPr δ
++
 CM008177.2 Hereford BK064707✤ [3,4] MAP 2883700-2884293 Hereford Btau3.1_ChrUn.1907 [2] (83) complement(17341-17934)
TRAV37TRAV37-1 TRAV37-1*01 P (70) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 2128803-2129354 Hereford Btau3.1_ChrUn.158 [2] (83,87) complement(290412-290964)
TRAV37TRAV37-2 TRAV37-2*01 P (71) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 2917922-2918471
TRAV38TRAV38-1 TRAV38-1*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 2133717-2134338
TRAV38TRAV38-1 TRAV38-1*02 F 10 Hereford Btau3.1_ChrUn.158 [2] (83,84) complement(285112-285733)
TRAV38TRAV38-2 TRAV38-2*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 2136576-2137216 Hereford Btau3.1_ChrUn.158 [2] (83) complement(282232-282872)
TRAV38TRAV38-2 TRAV38-2*02 F 10 Hereford Btau3.1_ChrUn.1002 [2] (83,84) 5482-6125
TRAV38TRAV38-3 TRAV38-3*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 2144647-2145287 Hereford Btau3.1_ChrUn.158 [2] (83) complement(274162-274802)
TRAV38TRAV38-3 TRAV38-3*02 F 10 Hereford Btau3.1_ChrUn.1907 [2] (83,84) 48664-49304
TRAV38TRAV38-4 TRAV38-4*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 2923155-2923776
TRAV38TRAV38-5 TRAV38-5*01 F 10
R αT αPr αR δT δPr δ
++
 CM008177.2 Hereford BK064707✤ [3,4] MAP 2930252-2930889
TRAV38TRAV38-6 TRAV38-6*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 2938242-2938882
TRAV39TRAV39-1 TRAV39-1*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 2157306-2157838 Hereford Btau3.1_ChrUn.158 [2] (83) complement(252376-252908)
TRAV39TRAV39-2 TRAV39-2*01 ORF (72) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 2950563-2951098 Hereford Btau3.1_ChrUn.1002 [2] (83) 23696-24231
TRAV40TRAV40 TRAV40*01 P (42) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP <2965379-2965524 * Hereford Btau3.1_ChrUn.1002 [2] (83) <42153-42298 *
TRAV41TRAV41 TRAV41*01 F 10
R αT αPr αR δT δPr δ
++
 CM008177.2 Hereford BK064707✤ [3,4] MAP 2969049-2969624 Hereford Btau3.1_ChrUn.1002 [2] (83) 45823-46398
TRAV43TRAV43-1 TRAV43-1*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2315646-2316214)
TRAV43TRAV43-2 TRAV43-2*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2609927-2610495) Hereford Btau3.1_ChrUn.221 [2] (83) complement(149328-149896)
TRAV43TRAV43-3 TRAV43-3*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2803669-2804226)
TRAV43TRAV43-3 TRAV43-3*02 F 10 Hereford Btau3.1_ChrUn.41 [2] (83,84) complement(95514-96071)
TRAV43TRAV43-3 TRAV43-3*03 F 10 Hereford Btau3.1_ChrUn.41 [2] (83,84) 376758-377315
TRAV43TRAV43-3 TRAV43-3*04 F 10
R αT αPr αR δT δPr δ
++
 Hereford Btau3.1_ChrUn.41 [2] (83,84) complement(587310-587867)
TRAV44TRAV44-1 TRAV44-1*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 371402-372210 Hereford Btau3.1_Chr10.28 [2] (83) complement(207873-208682)
Hereford Btau3.1_ChrUn.129 [2] (83) 322620-323429
Hereford Btau3.1_ChrUn.3458 [2] (83) complement(2005-2813)
TRAV44TRAV44-2 TRAV44-2*01 P (73) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 412446-413259
TRAV44TRAV44-3 TRAV44-3*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 656191-657003 Hereford Btau3.1_ChrUn.139 [2] (83) 323917-324729
TRAV44TRAV44-4 TRAV44-4*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 709906-711047 Hereford Btau3.1_ChrUn.41 [2] (83) 614847-615988
TRAV44TRAV44-5 TRAV44-5*01 P (74) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 731532-732669 Hereford Btau3.1_ChrUn.41 [2] (83) 636620-637757
TRAV44TRAV44-5 TRAV44-5*02 P (74) 10 Hereford Btau3.1_Chr10.28 [2] (83,84) 91464-92601
TRAV44TRAV44-6 TRAV44-6*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 1831409-1832219 Hereford Btau3.1_ChrUn.298 [2] (83) 237257-238067
TRAV44TRAV44-7 TRAV44-7*01 P (46) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 1845259-1846393
TRAV44TRAV44-8 TRAV44-8*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 1892643-1893741 Hereford Btau3.1_ChrUn.1227 [2] (83) complement(72686-73784)
TRAV44TRAV44-9 TRAV44-9*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 1960308-1961260 Hereford Btau3.1_ChrUn.1227 [2] (83) complement(21557-22509)
TRAV44TRAV44-10 TRAV44-10*01 F 10
R αT αPr αR δT δPr δ
++
 CM008177.2 Hereford BK064707✤ [3,4] MAP 2210173-2211319 Hereford Btau3.1_ChrUn.158 [2] (83) complement(198121-199266)
TRAV44TRAV44-11 TRAV44-11*01 P (75) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 2260267-2261083
TRAV44TRAV44-12 TRAV44-12*01 P (76) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 2273805-2274923 Hereford Btau3.1_ChrUn.158 [2] (83) complement(161259-162377)
TRAV44TRAV44-13 TRAV44-13*01 P (26) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2358089-2358895)
TRAV44TRAV44-14 TRAV44-14*01 P (36) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2399833-2400969)
TRAV44TRAV44-14 TRAV44-14*02 P (36) 10 Hereford Btau3.1_ChrUn.41 [2] (83,84) 289261-290397
TRAV44TRAV44-15 TRAV44-15*01 ORF (77) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2417776-2418912) Hereford Btau3.1_ChrUn.41 [2] (83) 261738-262874
TRAV44TRAV44-16 TRAV44-16*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2464061-2464873)
TRAV44TRAV44-16 TRAV44-16*02 P (75) 10 Hereford Btau3.1_ChrUn.41 [2] (83,84) complement(178485-179301)
TRAV44TRAV44-17 TRAV44-17*01 P (50) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2487946-2488753)
TRAV44TRAV44-17 TRAV44-17*02 P (50) 10 Hereford Btau3.1_ChrUn.221 [2] (83,84) complement(20567-21372)
TRAV44TRAV44-18 TRAV44-18*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2689552-2690360) Hereford Btau3.1_ChrUn.221 [2] (83) complement(250313-251121)
TRAV45TRAV45-1 TRAV45-1*01 P (78) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 241607-242114 Hereford Btau3.1_Chr10.28 [2] (83) complement(302653-303160)
TRAV45TRAV45-2 TRAV45-2*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 250102-250606 Hereford Btau3.1_Chr10.28 [2] (83) complement(294161-294665)
TRAV45TRAV45-2 TRAV45-2*02 F 10
R αT αPr αR δT δPr δ
++
 Hereford Btau3.1_ChrUn.129 [2] (83,84) 254157-254916
TRAV45TRAV45-3 TRAV45-3*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 546892-547401 Hereford Btau3.1_ChrUn.129 [2] (83) 220316-220825
TRAV45TRAV45-4 TRAV45-4*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 552581-553090 Hereford Btau3.1_ChrUn.129 [2] (83) 226005-226514
TRAV45TRAV45-5 TRAV45-5*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 558423-558934 Hereford Btau3.1_ChrUn.129 [2] (83) 237233-237744
TRAV45TRAV45-5 TRAV45-5*02 (F) 10
R αT αPr αR δT δPr δ
+
 AY227782 [1] (84) 3874-4157 *
TRAV45TRAV45-6 TRAV45-6*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 592891-593402
TRAV45TRAV45-6 TRAV45-6*02 F 10 Hereford Btau3.1_ChrUn.221 [2] (83,84) complement(309577-310088)
TRAV45TRAV45-7 TRAV45-7*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 598601-599110
TRAV45TRAV45-8 TRAV45-8*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 605339-605850
TRAV45TRAV45-9 TRAV45-9*01 P (79) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 629371-630120
TRAV45TRAV45-9 TRAV45-9*02 P (79) 10 Hereford Btau3.1_ChrUn.139 [2] (83,84) 286077-286826
TRAV45TRAV45-10 TRAV45-10*01 ORF (80) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2529999-2530503) Hereford Btau3.1_ChrUn.221 [2] (83) complement(68819-69323)
TRAV45TRAV45-11 TRAV45-11*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2536929-2537440) Hereford Btau3.1_ChrUn.221 [2] (83) complement(76417-76928)
TRAV45TRAV45-12 TRAV45-12*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2548788-2549300) Hereford Btau3.1_ChrUn.221 [2] (83) complement(88281-88793)
TRAV45TRAV45-13 TRAV45-13*01 P (13) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2729021-2729529) Hereford Btau3.1_ChrUn.221 [2] (83) complement(289814-290322)
TRAV45TRAV45-13 TRAV45-13*02 F 10 Hereford Btau3.1_ChrUn.41 [2] (83,84) 451448-451959
TRAV45TRAV45-14 TRAV45-14*01 P (81) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2740605-2741117)
TRAV45TRAV45-14 TRAV45-14*02 F 10 Hereford Btau3.1_ChrUn.221 [2] (83,84) complement(301399-301910) Hereford Btau3.1_ChrUn.41 [2] (83) 439860-440371
TRAV45TRAV45-15 TRAV45-15*01 F 10 CM008177.2 Hereford BK064707✤ [3,4] MAP complement(2746329-2746840)
TRAV45TRAV45-15 TRAV45-15*02 F 10 Hereford Btau3.1_ChrUn.41 [2] (83,84) 433849-434360
TRAV46TRAV46 TRAV46*01 P (82) 10 CM008177.2 Hereford BK064707✤ [3,4] MAP 3072223-3072489 * Hereford Btau3.1_ChrUn.158 [2] (83) complement(56147-56413) *

✤ : NCBI accession number that correspond to a previously internal IMGT accession number. See the correspondence table.

IMGT notes: ↑
  1. frameshift in V-REGION: deletion of 1 nt in FR1-IMGT
  2. frameshift in L-PART2, frameshift in V-REGION: deletion of 1 nt in FR3-IMGT
  3. frameshifts in V-REGION: several insertions
  4. no L-PART1, STOP-CODON in V-REGION: position 51
  5. several STOP-CODON in V-REGION, frameshifts in V-REGION: deletion of 5 nt and 1 nt in FR3-IMGT
  6. no ACCEPTOR-SPLICE, frameshifts in V-REGION: several insertions and deletions
  7. no INIT-CODON: Val instead of Met, no ACCEPTOR-SPLICE, frameshifts in V-REGION: several insertions and deletions
  8. STOP-CODON in V-REGION: position 51, frameshift in V-REGION: deletion of 1 nt in FR3-IMGT
  9. frameshift in V-REGION: deletion of 11 nt in FR1-IMGT
  10. deletions in V-REGION: AA 78 to 107 are missing, no V-RS
  11. no INIT-CODON: Arg instead of Met
  12. no 1st-CYS: Ser instead of Cys
  13. frameshift in L-PART1
  14. STOP-CODON in L-PART1, insertion of 645 nt in V-REGION
  15. STOP-CODON in V-REGION: position 86
  16. frameshift in V-REGION: insertion of 1 nt in FR3-IMGT
  17. frameshifts in V-REGION: several insertions and deletions
  18. frameshift in V-REGION: deletion of 2 nt in FR1-IMGT
  19. STOP-CODON in V-REGION: position 95
  20. unexpected V-INTRON length
  21. STOP-CODON in V-REGION: position 9
  22. noncanonical DONOR-SPLICE: nat instead of ngt
  23. frameshift in V-REGION: deletion of 1 nt in FR3-IMGT
  24. frameshift in L-PART2
  25. noncanonical V-NONAMER: acagcaacc instead of acccaaacc
  26. frameshift in V-REGION: deletion of 1 nt in CDR1-IMGT
  27. frameshift in L-PART1, frameshifts in V-REGION: several insertions and deletions, no V-RS
  28. noncanonical V-HEPTAMER: cacaata instead of cacagtg
  29. noncanonical ACCEPTOR-SPLICE: naann instead of nagnn
  30. frameshift in L-PART1, frameshift in L-PART2, frameshifts in V-REGION: several insertions and deletions
  31. noncanonical V-NONAMER: acacagcct instead of acccaaacc
  32. noncanonical V-HEPTAMER: cactgcg instead of cacagtg
  33. no INIT-CODON: Thr instead of Met, frameshift in L-PART1, deletions in V-REGION: AA 80 to 107 are missing, no V-RS
  34. STOP-CODON in L-PART2
  35. frameshift in V-REGION: deletion of 4 nt in CDR1-IMGT
  36. frameshift in V-REGION: deletion of 1 nt in FR2-IMGT
  37. deletions in V-REGION: 8 AA are missing, no 1st-CYS
  38. STOP-CODON in L-PART2, frameshifts in V-REGION: several deletions
  39. noncanonical ACCEPTOR-SPLICE: ntgnn instead of nagnn
  40. no INIT-CODON: Gln instead of Met, STOP-CODON in L-PART1, STOP-CODON in V-REGION: position 16
  41. STOP-CODON in L-PART1, the splicing between the DONOR-SPLICE of L-PART1 and the ACCEPTOR-SPLICE of L-PART2 results into a STOP-CODON, STOP-CODON in V-REGION: position 9
  42. truncated pseudogene
  43. frameshift in L-PART1, frameshift in V-REGION: deletion of 1 nt in FR1-IMGT
  44. STOP-CODON in V-REGION: position 9, frameshifts in V-REGION: several insertions
  45. several STOP-CODON in V-REGION, frameshift in V-REGION: insertion of 5 nt in FR3-IMGT
  46. frameshifts in V-REGION: several deletions
  47. frameshift in V-REGION: deletion of 4 nt in FR1-IMGT
  48. no INIT-CODON: Leu instead of Met
  49. unexpected V-SPACER length: 16 nt instead of 23 nt
  50. frameshift in V-REGION: deletion of 2 nt in FR3-IMGT
  51. frameshift in L-PART1, STOP-CODON in L-PART2, no CONSERVED-TRP: STOP-CODON instead of Trp, frameshift in V-REGION: deletion of 1 nt in FR2-IMGT
  52. STOP-CODON in V-REGION: position 6
  53. STOP-CODON in V-REGION: position 37
  54. no L-PART1, STOP-CODON in V-REGION: position 75
  55. no L-PART1, no L-PART2, deletions in V-REGION: AA 1 to 11 are missing, several STOP-CODON in V-REGION
  56. STOP-CODON in L-PART1, STOP-CODON in V-REGION: position 37
  57. several STOP-CODON in V-REGION, frameshift in V-REGION: insertion of 1 nt in FR3-IMGT
  58. frameshifts in L-PART1, frameshift in L-PART2, frameshifts in V-REGION: several insertions and deletions
  59. the splicing between the DONOR-SPLICE of L-PART1 and the ACCEPTOR-SPLICE of L-PART2 results into a STOP-CODON, frameshift in L-PART2, STOP-CODON in V-REGION: position 2
  60. frameshift in L-PART2, STOP-CODON in V-REGION: position 76
  61. no 2nd-CYS: Tyr instead of Cys
  62. no INIT-CODON: Leu instead of Met, STOP-CODON in V-REGION: position 93, no V-NONAMER
  63. no INIT-CODON: Leu instead of Met, several STOP-CODON in V-REGION, no V-NONAMER
  64. frameshift in V-REGION: insertion of 1 nt in 2nd-CYS
  65. noncanonical V-NONAMER: acacatacg instead of acccaaacc
  66. noncanonical V-NONAMER: actcaaatg instead of acccaaacc
  67. no INIT-CODON: Lys instead of Met, frameshifts in V-REGION: several deletions
  68. frameshift in L-PART2, frameshifts in V-REGION: several insertions and deletions, no V-NONAMER
  69. frameshift in L-PART2, frameshifts in V-REGION: several insertions and deletions
  70. frameshift in L-PART1, frameshift in V-REGION: deletion of 2 nt in FR2-IMGT
  71. STOP-CODON in L-PART1, frameshift in V-REGION: deletion of 2 nt in FR2-IMGT
  72. no 1st-CYS: Phe instead of Cys, noncanonical V-HEPTAMER: catagta instead of cacagtg
  73. STOP-CODON in V-REGION: position 58
  74. no INIT-CODON: Leu instead of Met, STOP-CODON in V-REGION: position 58
  75. frameshift in V-REGION: insertion of 4 nt in FR1-IMGT
  76. several STOP-CODON in V-REGION
  77. noncanonical V-HEPTAMER: catactg instead of cacagtg, noncanonical V-NONAMER: cagcacctc instead of acccaaacc
  78. frameshift in L-PART1, STOP-CODON in V-REGION: position 90
  79. no L-PART2
  80. noncanonical V-NONAMER: gcagaaacc instead of acccaaacc
  81. frameshift in V-REGION: insertion of 1 nt in FR1-IMGT
  82. no INIT-CODON: Thr instead of Met, STOP-CODON in V-REGION: position 3, frameshifts in V-REGION: several deletions, no V-NONAMER
  83. The localization of the sequences in the Btau3.1 project is indicated in the accession number after the underscore
  84. Sequence not in locus reference sequence (assembly ARS-UCD1.2)
  85. frameshift in L-PART1, frameshift in V-REGION
  86. Functionality different from the reference sequence: F
  87. frameshift in V-REGION
IMGT references: ↑
  1. Conrad M.L. et al., Genomic sequencing of the T cell receptor alpha locus, Unpublished.
  2. Herzig C.T. et al., Annotation and classification of the bovine T cell receptor delta genes, BMC Genomics, vol. 11, 2010, pp. 100-100. DOI: 10.1186/1471-2164-11-100
  3. Manso,T. et al., IMGT(R) databases, related tools and web resources through three main axes of research and development, Nucleic Acids Res, vol. 50, no. D1, 2022, pp. D1262-D1272. PUBMED: 34875068
  4. Pegorier P et al., IMGT((R)) Biocuration and Comparative Analysis of Bos taurus and Ovis aries TRA/TRD Loci, Genes (Basel), vol. 12, no. 1, 2020, pp. E30-. PUBMED: 33379283