Citing IMGT databases: Manso T. et al. IMGT® databases, related tools and web resources through three main axes of research and development. Nucleic Acids Res. 2022 Jan 7;50(D1):D1262-D1272. doi: 10.1093/nar/gkab1136 PMID: 34875068 Free PMC article.
Program version: v. 

Add the possibility to obtain a gene table per strain (for mouse now and for other species later) and allotypes/isotypes for human.
September 25th, 2024.

Bibliographical references in alphabetic order, small design changes and addition of "NL" for non-localized gene.
June 14th, 2024.

Addition of 'Score for IMGT allele confirmation' as well as NCBI TPA accession numbers.
September 20th, 2023.

Implementation of the dynamic gene table.

Gene table legend:

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene, when the data have been confirmed by several studies.

Functionality is shown in parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.

IMGT allele confirmation: a scoring system is employed to signify the frequency of occurrences of a specific allele within sequence data. A single star () indicates that no instances of the allele have been identified in the literature. Two stars () indicate the discovery of one literature sequence containing the allele. If more than one literature sequence is found to contain the allele, it is designated with three stars (). In the Excel file, the stars are represented by the plus symbol (+).

Click on:
  • IMGT gene name to get the corresponding IMGT/GENE-DB entry (link).
  • IMGT allele name to see the corresponding Alignments of alleles (link).
  • Accession number to get the corresponding IMGT/LIGM-DB entry (link).
  • MAP: mapped sequences. Click to access GENE-DB «LOCALIZATION IN GENOME ASSEMBLIES» (link).
  • [number] to access the corresponding IMGT reference (popover).
  • (number) to see the corresponding IMGT note (popover).
Options:
  • You can show/hide columns (), download data () or put the table in fullscreen () using buttons.
See also (IMGT Scientific chart):
Select a species and a IMGT group to get the gene table:
Only IMGT available species/group are shown in the drop-down list.
The gene table can take several seconds to appear, please be patient.
Gene table of dog (Canis lupus familiaris) TRAV IMGT group:
IMGT sub­groupIMGT gene nameIMGT allele nameScore for
IMGT allele
confirmation		FctChromosomosal
localization		R T PrIMGT/LIGM-DB reference sequencesIMGT/LIGM-DB sequences from the literature
Clone namesBreedAccession
numbers		Positions
in the sequence
(L-V-GENE-UNIT)
or V-REGION (*)		Secondary
accession
numbers		Clone namesBreedAccession
numbers		Positions
in the sequence
(L-V-GENE-UNIT)
or V-REGION (*)
TRAV8TRAV8-1 TRAV8-1*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 244884-245391
TRAV8TRAV8-2 TRAV8-2*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 301018-301506
TRAV8TRAV8-3 TRAV8-3*01 P (1) 8 CM000008.3 boxer BK065026✤ [1,2] MAP 355280-355559 *
TRAV9TRAV9-1 TRAV9-1*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 10355-10853
TRAV9TRAV9-2 TRAV9-2*01 P (2) 8 CM000008.3 boxer BK065026✤ [1,2] MAP 37537-38026
TRAV9TRAV9-3 TRAV9-3*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 55000-55505
TRAV9TRAV9-4 TRAV9-4*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 63730-64231
TRAV9TRAV9-5 TRAV9-5*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 85858-86356
TRAV9TRAV9-6 TRAV9-6*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 101911-102416
TRAV9TRAV9-7 TRAV9-7*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 124500-124998
TRAV9TRAV9-8 TRAV9-8*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 140161-140666
TRAV9TRAV9-9 TRAV9-9*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 147328-147829
TRAV9TRAV9-10 TRAV9-10*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 170052-170550
TRAV9TRAV9-11 TRAV9-11*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 188176-188675
TRAV9TRAV9-12 TRAV9-12*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 191289-191790
TRAV9TRAV9-13 TRAV9-13*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 208581-209079
TRAV10TRAV10 TRAV10*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 225116-225720
TRAV11TRAV11 TRAV11*01 P (3) 8 CM000008.3 boxer BK065026✤ [1,2] MAP 230527-231073
TRAV12TRAV12 TRAV12*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 240597-241190
TRAV13TRAV13-1 TRAV13-1*01 P (4) 8 CM000008.3 boxer BK065026✤ [1,2] MAP 80462-81004
TRAV13TRAV13-1-1 TRAV13-1-1*01 P (5) 8 CM000008.3 boxer BK065026✤ [1,2] MAP 3416-3958
TRAV13TRAV13-2 TRAV13-2*01 P (6) 8 CM000008.3 boxer BK065026✤ [1,2] MAP 118388-118927
TRAV13TRAV13-3 TRAV13-3*01 P (7) 8 CM000008.3 boxer BK065026✤ [1,2] MAP 161237-161777
TRAV13TRAV13-4 TRAV13-4*01 P (7) 8 CM000008.3 boxer BK065026✤ [1,2] MAP 202473-203015
TRAV14TRAV14-1 TRAV14-1*01 P (8) 8 CM000008.3 boxer BK065026✤ [1,2] MAP 57615-58401
TRAV14TRAV14-2 TRAV14-2*01 P (8) 8 CM000008.3 boxer BK065026✤ [1,2] MAP 142803-143589
TRAV14TRAV14-3 TRAV14-3*01 P (9) 8 CM000008.3 boxer BK065026✤ [1,2] MAP 182276-183065
TRAV17TRAV17 TRAV17*01 P (10) 8 CM000008.3 boxer BK065026✤ [1,2] MAP 251087-251668
TRAV18TRAV18 TRAV18*01 P (11) 8 CM000008.3 boxer BK065026✤ [1,2] MAP 255277-255741
TRAV19TRAV19 TRAV19*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 262616-263213
TRAV20TRAV20 TRAV20*01 P (12) 8 CM000008.3 boxer BK065026✤ [1,2] MAP 271348-271628 *
TRAV21TRAV21 TRAV21*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 286839-287405
TRAV22TRAV22 TRAV22*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 305956-306557
TRAV23TRAV23 TRAV23*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 308245-308866
TRAV24TRAV24 TRAV24*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 329874-330417
TRAV25TRAV25 TRAV25*01 P (13) 8 CM000008.3 boxer BK065026✤ [1,2] MAP 344760-345028 *
TRAV26TRAV26 TRAV26*01 P (14) 8 CM000008.3 boxer BK065026✤ [1,2] MAP 403128-403906
TRAV27TRAV27 TRAV27*01 P (14) 8 CM000008.3 boxer BK065026✤ [1,2] MAP 362097-362636
TRAV28TRAV28 TRAV28*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 368136-368733
TRAV29TRAV29 TRAV29*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 376185-376765
TRAV30TRAV30 TRAV30*01 P (15) 8 CM000008.3 boxer BK065026✤ [1,2] MAP 381000-381270 *
TRAV31TRAV31 TRAV31*01 P (16) 8 CM000008.3 boxer BK065026✤ [1,2] MAP 383769-384056 *
TRAV33TRAV33 (22) TRAV33*01 ORF (17) 8 CM000008.3, TRDV2 boxer BK065026✤ [1,2] MAP 391916-392519
TRAV34TRAV34 TRAV34*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 417843-418472
TRAV35TRAV35 TRAV35*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 430403-431010
TRAV36TRAV36 TRAV36*01 P (18) 8 CM000008.3 boxer BK065026✤ [1,2] MAP 437833-438405
TRAV37TRAV37 TRAV37*01 P (19) 8 CM000008.3 boxer BK065026✤ [1,2] MAP 459335-459615 *
TRAV38TRAV38-1 TRAV38-1*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 463238-463842
TRAV38TRAV38-2 TRAV38-2*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 470963-471582
TRAV40TRAV40 TRAV40*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 501701-502320
TRAV41TRAV41 TRAV41*01 P (20) 8 CM000008.3 boxer BK065026✤ [1,2] MAP 505633-506206
TRAV43TRAV43-1 TRAV43-1*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 778-1315
TRAV43TRAV43-2 TRAV43-2*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 23767-24331
TRAV43TRAV43-3 TRAV43-3*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 72984-73522
TRAV43TRAV43-4 TRAV43-4*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 113137-113675
TRAV43TRAV43-5 TRAV43-5*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 155663-156198
TRAV43TRAV43-6 TRAV43-6*01 F 8 CM000008.3 boxer BK065026✤ [1,2] MAP 196179-196733
TRAV46TRAV46 TRAV46*01 P (21) 8 CM000008.3 boxer BK065026✤ [1,2] MAP 575455-575891

✤ : NCBI accession number that correspond to a previously internal IMGT accession number. See the correspondence table.

IMGT notes: ↑
  1. Frameshift in V-REGION, no V-NONAMER
  2. Frameshift in FR2-IMGT, in frame STOP-CODON in FR1-IMGT
  3. Frameshift in V-REGION (deletion of 4 nt in 3' of FR1-IMG, no CDR1-IMGT), frameshift in L-PART1
  4. Frameshift in FR3-IMGT (deletion of 1 nt from codon 89 and 2 nt from codon 101)
  5. Frameshift in V-REGION, in frame STOP-CODON in L-PART1
  6. Frameshift in FR3-IMGT (deletion of 1 nt from codon 89 and 2 nt from codon 101) , frameshift in L-PART1
  7. Frameshift in FR3-IMGT, frameshift in L-PART1
  8. Frameshift in V-REGION
  9. Frameshift in FR3-IMGT
  10. In frame STOP-CODON in L-PART1
  11. Frameshift in CDR1-IMGT, no CDR2-IMGT, frameshift in FR3-IMGT (7 nt are missing in 5')
  12. Frameshift in L-PART1, frameshift in FR3-IMGT, no V-RS
  13. No L-PART1
  14. Frameshift in L-PART1
  15. frameshift in V-REGION, frameshift in L-PART1, no V-RS
  16. frameshift in L-PART1, frameshift in FR1-IMGT and FR3-IMGT, no V-RS
  17. CONSERVED-TRP is replaced by Arg
  18. frameshift in FR1-IMGT, frameshift in L-PART1
  19. No L-PART1 and in frame STOP-CODON in FR1-IMGT
  20. Frameshift in CDR1-IMGT
  21. STOP-CODON in V-REGION: position 42
  22. Canis lupus familiaris TRAV33 (ORF) [8.7.4] gene is the unique representative of the Canlupfam TRAV33 subgroup in IMGT000004 (CM000008.3) and its name replaces old TRDV2 (ORF) name (V. Nguefack Ngoune and M-P. Lefranc, 23/09/2020).
IMGT references: ↑
  1. Manso,T. et al., IMGT(R) databases, related tools and web resources through three main axes of research and development, Nucleic Acids Res, vol. 50, no. D1, 2022, pp. D1262-D1272. PUBMED: 34875068
  2. Martin J. et al., Comprehensive annotation and evolutionary insights into the canine (Canis lupus familiaris) antigen receptor loci, Immunogenetics, vol. 70, no. 4, 2018, pp. 223-236. PUBMED: 28924718