Citing IMGT databases: Manso T. et al. IMGT® databases, related tools and web resources through three main axes of research and development. Nucleic Acids Res. 2022 Jan 7;50(D1):D1262-D1272. doi: 10.1093/nar/gkab1136 PMID: 34875068 Free PMC article.
Program version: v. 

Addition of 'Score for IMGT allele confirmation' as well as NCBI TPA accession numbers.
September 20th, 2023.

Implementation of the dynamic gene table.

Gene table legend:

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene, when the data have been confirmed by several studies.

Functionality is shown in parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.

In the realm of IMGT allele confirmation, a scoring system is employed to signify the frequency of occurrences of a specific allele within sequence data. A single star (*) indicates that no instances of the allele have been identified in the literature. Two stars (**) indicate the discovery of one literature sequence containing the allele. If more than one literature sequence is found to contain the allele, it is designated with three stars (***). In the Excel file, the stars are represented by the plus symbol (+).

Click on:
  • IMGT gene name to get the corresponding IMGT/GENE-DB entry (link).
  • IMGT allele name to see the corresponding Alignments of alleles (link).
  • Accession number to get the corresponding IMGT/LIGM-DB entry (link).
  • MAP: mapped sequences. Click to access GENE-DB «LOCALIZATION IN GENOME ASSEMBLIES» (link).
  • [number] to access the corresponding IMGT reference (popover).
  • (number) to see the corresponding IMGT note (popover).
Options:
  • You can show/hide columns (), download data () or put the table in fullscreen () using buttons.
See also (IMGT Scientific chart):
Select a species and a IMGT group to get the gene table:
Only IMGT available species/group are shown in the drop-down list.
The gene table can take several seconds to appear, please be patient.
Gene table of Naked mole-rat (Heterocephalus glaber) TRBC IMGT group:
IMGT gene nameIMGT allele nameFctScore for
IMGT allele
confirmation
Chromosomosal
localization
ExonsR T PrIMGT/LIGM-DB reference sequencesIMGT/LIGM-DB sequences from the literature
IsolateClone namesAccession
numbers
Positions
in the sequence
Secondary
accession
numbers
IsolateClone namesAccession
numbers
Positions
in the sequence
TRBC1 TRBC1*01 F 22 EX1 BK064758 [1] MAP 253222-253611 MEF-2018 IMGT000070 329408-329797
TRBC1 TRBC1*01 F 22 EX2 BK064758 [1] MAP 254020-254037 MEF-2018 IMGT000070 330206-330223
TRBC1 TRBC1*01 F 22 EX3 BK064758 [1] MAP 254161-254260 MEF-2018 IMGT000070 330347-330453
TRBC1 TRBC1*01 F 22 EX4 BK064758 [1] MAP 254584-254601 MEF-2018 IMGT000070 330770-330787
TRBC1 TRBC1*02 F 22 EX1 BK064759 [1] MAP 253213-253602
TRBC1 TRBC1*02 F 22 EX2 BK064759 [1] MAP 254011-254028
TRBC1 TRBC1*02 F 22 EX3 BK064759 [1] MAP 254152-254258
TRBC1 TRBC1*02 F 22 EX4 BK064759 [1] MAP 254575-254592
TRBC2 TRBC2*01 F 22 EX1 BK064758 [1] MAP 261370-261759 MEF-2018 IMGT000070 337491-337880
TRBC2 TRBC2*01 F 22 EX2 BK064758 [1] MAP 262244-262261 MEF-2018 IMGT000070 338365-338382
TRBC2 TRBC2*01 F 22 EX3 BK064758 [1] MAP 262404-262510 MEF-2018 IMGT000070 338525-338631
TRBC2 TRBC2*01 F 22 EX4 BK064758 [1] MAP 262798-262815 MEF-2018 IMGT000070 338919-338936
TRBC2 TRBC2*02 F 22 EX1 BK064759 [1] MAP 261369-261758 NMR 29 IMGT000080 155873-156262
TRBC2 TRBC2*02 F 22 EX2 BK064759 [1] MAP 262243-262260 NMR 29 IMGT000080 156747-156764
TRBC2 TRBC2*02 F 22 EX3 BK064759 [1] MAP 262403-262509 NMR 29 IMGT000080 156907-157013
TRBC2 TRBC2*02 F 22 EX4 BK064759 [1] MAP 262798-262815 NMR 29 IMGT000080 157301-157318

✤ : NCBI accession number that correspond to a previously internal IMGT accession number. See the correspondence table.

IMGT references:
  1. Manso,T. et al., IMGT(R) databases, related tools and web resources through three main axes of research and development, Nucleic Acids Res, vol. 50, no. D1, 2022, pp. D1262-D1272. PUBMED: 34875068