Naked mole-rat (Heterocephalus glaber) TRBV genes
The Naked mole-rat (
Heterocephalus glaber) TRB locus comprises 33 TRBV genes belonging to 27 TRBV subgroups:
The TRBV genes are localized in 2 V-CLUSTER:
- the 5' V-CLUSTER, classically in 5' of the TRBD, TRBJ and TRBC, includes 32 TRBV genes belonging to 26 subgroups.
- the 3' V-CLUSTER, downstream of the TRBC in inverted orientation, includes 1 TRBV gene.
Provisional nomenclature (scaffolds only, no chromosome assembly).
Localization of the V-CLUSTER in the locus |
IMGT subgroup |
Functional |
ORF |
Pseudogene |
Total |
5' V-CLUSTER |
TRBV1 |
0 |
0 |
1(1:0) |
1 |
TRBV2 |
0 |
1 |
0 |
1 |
TRBV4 |
1 |
0 |
0 |
1 |
TRBV5 |
0 |
0 |
1(0:1) |
1 |
TRBV6 |
0 |
1 |
0 |
1 |
TRBV7 |
1 |
0 |
0 |
1 |
TRBV8 |
0 |
1 |
0 |
1 |
TRBV9 |
1 |
0 |
0 |
1 |
TRBV10 |
0 |
1 |
0 |
1 |
TRBV12 |
1 |
1 |
0 |
2 |
TRBV13 |
0 |
0 |
1(1:0) |
1 |
TRBV15 |
0 |
0 |
1(0:1) |
1 |
TRBV16 |
0 |
0 |
1(1:0) |
1 |
TRBV18 |
1 |
0 |
1(0:1) |
2 |
TRBV19 |
0 |
1 |
1(0:1) |
2 |
TRBV20 |
0 |
2 |
0 |
2 |
TRBV21 |
0 |
0 |
1(1:0) |
1 |
TRBV22 |
0 |
0 |
1(0:1) |
1 |
TRBV23 |
0 |
2 |
0 |
2 |
TRBV24 |
0 |
0 |
2(0:2) |
2 |
TRBV25 |
0 |
0 |
1(1:0) |
1 |
TRBV26 |
1 |
0 |
0 |
1 |
TRBV27 |
0 |
0 |
1(1:0) |
1 |
TRBV28 |
0 |
0 |
1(0:1) |
1 |
TRBV29 |
0 |
0 |
1(0:1) |
1 |
TRBVA |
0 |
0 |
1(0:1) |
1 |
3' V-CLUSTER |
TRBV30 |
1 |
0 |
0 |
1 |
Total |
8 |
8 |
17 |
33 |
In the column 'Pseudogene', the number of pseudogenes with V-REGION in-frame and the number of pseudogenes with frameshift(s) are shown separated by two dots, between parentheses.
Naked mole-rat (Heterocephalus glaber) TRBD genes
The Naked mole-rat (
Heterocephalus glaber) TRB locus comprises 2 TRBD genes belonging to 2 TRBD set:
IMGT group |
IMGT set or subgroup (if any) |
Functional |
ORF |
Pseudogene |
Total |
TRBD |
TRBD1 |
1 |
0 |
0 |
1 |
TRBD2 |
1 |
0 |
0 |
1 |
Total |
2 |
0 |
0 |
2 |
Naked mole-rat (Heterocephalus glaber) TRBJ genes
The Naked mole-rat (
Heterocephalus glaber)TRB locus comprises 12 TRBJ genes belonging to 2 TRBJ set:
IMGT group |
IMGT set or subgroup (if any) |
Functional |
ORF |
Pseudogene |
Total |
TRBJ |
TRBJ1 |
3 |
2 |
0 |
5 |
TRBJ2 |
4 |
3 |
0 |
7 |
Total |
7 |
5 |
0 |
12 |
More information:
Gene table: Naked mole-rat (Heterocephalus glaber) TRBV
Gene table: Naked mole-rat (Heterocephalus glaber) TRBD
Gene table: Naked mole-rat (Heterocephalus glaber) TRBJ
Locus description: Naked mole-rat (Heterocephalus glaber) TRB