IMGT Repertoire (IG and TR)
Potential germline repertoire: zebrafish (Danio rerio) TRAV and TRAJ genes on chromosome 2
Zebrafish (Danio rerio) TRAV genes
The zebrafish (Danio rerio) TRA locus on chromosome 2 comprises 152 TRAV genes belonging to 75 TRAV subgroups:- 123 FUNCTIONAL
- 4 ORF (Open Reading Frame)
- 6 PSEUDOGENE
| IMGT group | IMGT subgroup | Functional | ORF | Pseudogene | Total |
|---|---|---|---|---|---|
| TRAV | TRAV1 | 1 | 0 | 0 | 1 |
| TRAV2 | 1 | 0 | 0 | 1 | |
| TRAV3 | 1 | 0 | 0 | 1 | |
| TRAV4 | 7 | 0 | 0 | 7 | |
| TRAV5 | 1 | 0 | 0 | 1 | |
| TRAV6 | 2 (+2)* | (+1)* | 1 (1**:1**) (+1 (1:0))* | 5 | |
| TRAV7 | 5 | 0 | 0 | 5 | |
| TRAV8 | 0 | 0 | 1 (0:1) | 1 | |
| TRAV9 | 6 (+1)* | (+1)* | 0 | 7 | |
| TRAV10 | 4 | 0 | 0 | 4 | |
| TRAV11 | 4 (+1)* | 0 | 1 (1:0) (+1 (0:1))* | 6 | |
| TRAV12 | 1 | 0 | 0 | 1 | |
| TRAV13 | 2 (+1)* | 0 | (+1 (0:1))* | 3 | |
| TRAV14 | 1 | 0 | 0 | 1 | |
| TRAV15 | 1 | 0 | 0 | 1 | |
| TRAV16 | 1 | 0 | 0 | 1 | |
| TRAV17 | (+1)* | 0 | (+1 (1:0))* | 1 | |
| TRAV18 | 11 (+1)* | 0 | (+1 (1:0))* | 12 | |
| TRAV19 | 1 | 0 | 0 | 1 | |
| TRAV20 | 3 | 0 | 0 | 3 | |
| TRAV21 | 3 | 1 | 1 (0:1) | 5 | |
| TRAV22 | 2 | 2 | 0 | 4 | |
| TRAV23 | (+1)* | 0 | (+1 (0:1))* | 1 | |
| TRAV24 | 2 | 0 | 0 | 2 | |
| TRAV25 | 2 (+1)* | (+1)* | 0 | 3 | |
| TRAV26 | (+2)* | 0 | (+2 (2:0))* | 2 | |
| TRAV27 | 1 | 0 | 0 | 1 | |
| TRAV28 | 1 | 0 | 0 | 1 | |
| TRAV29 | 3 | 0 | 0 | 3 | |
| TRAV30 | 1 | 0 | 0 | 1 | |
| TRAV31 | 1 | 0 | 0 | 1 | |
| TRAV32 | 1 | 0 | 0 | 1 | |
| TRAV33 | 1 | 0 | 0 | 1 | |
| TRAV34 | 1 | 0 | 0 | 1 | |
| TRAV35 | 1 | 0 | 0 | 1 | |
| TRAV36 | (+1)* | (+1)* | 0 | 1 | |
| TRAV37 | 1 | 0 | 0 | 1 | |
| TRAV38 | 1 | 0 | 0 | 1 | |
| TRAV39 | 1 | 0 | 0 | 1 | |
| TRAV40 | 1 | 0 | 0 | 1 | |
| TRAV41 | 1 | 0 | 0 | 1 | |
| TRAV42 | 2 | 0 | 0 | 2 | |
| TRAV43 | 1 (+1)* | 0 | (+1 (1:0))* | 2 | |
| TRAV44 | 3 | 0 | 0 | 3 | |
| TRAV45 | 1 | 0 | 0 | 1 | |
| TRAV46 | 1 | 0 | 0 | 1 | |
| TRAV47 | (+1)* | 0 | (+1 (1:0))* | 1 | |
| TRAV48 | 1 | 0 | 0 | 1 | |
| TRAV49 | 1 | 0 | 0 | 1 | |
| TRAV50 | 1 | 0 | 0 | 1 | |
| TRAV51 | 1 | 0 | 0 | 1 | |
| TRAV52 | 1 | 0 | 0 | 1 | |
| TRAV53 | 1 | 0 | 0 | 1 | |
| TRAV54 | 1 | 0 | 0 | 1 | |
| TRAV55 | 0 | 0 | 1 | 1 | |
| TRAV56 | 1 | 0 | 0 | 1 | |
| TRAV57 | 1 | 0 | 0 | 1 | |
| TRAV58 | 1 | 0 | 0 | 1 | |
| TRAV59 | 1 | 0 | 0 | 1 | |
| TRAV60 | 1 | 0 | 0 | 1 | |
| TRAV61 | 1 | 0 | 0 | 1 | |
| TRAV62 | 3 | 0 | 0 | 3 | |
| TRAV63 | 4 | 0 | 0 | 4 | |
| TRAV64 | (+1)* | 0 | 1 (1:0) (+1 (0:1))* | 2 | |
| TRAV65 | 2 | 0 | 0 | 2 | |
| TRAV66 | 1 | 0 | 0 | 1 | |
| TRAV67 | 2 | 0 | 0 | 2 | |
| TRAV68 | (+1)* | 0 | (+1 (0:1))* | 1 | |
| TRAV69 | 4 | 0 | 0 | 4 | |
| TRAV70 | 1 | 0 | 0 | 1 | |
| TRAV71 | 2 | 0 | 0 | 2 | |
| TRAV72 | 3 (+1)* | 0 | (+1 (0:1))* | 4 | |
| TRAV73 | 1 (+1)* | 1 | (+1 (1:0))* | 3 | |
| TRAV74 | (+1)* | 0 | (+1 (1:0))* | 1 | |
| TRAV75 | 1 | 0 | 0 | 1 | |
| Total | 123 (+19)* | 4 (+4)* | 6 (+15)* | 152 | |
** One allele is P in-frame and the other is P out-of-frame.
Zebrafish (Danio rerio) TRAJ genes
The zebrafish (Danio rerio) TRA locus on chromosome 2 comprises 123 TRAJ genes belonging to 123 TRAJ subgroups:- 107 FUNCTIONAL
- 14 ORF (Open Reading Frame)
- 1 PSEUDOGENE
| IMGT group | IMGT set or subgroup (if any) | Functional | ORF | Pseudogene | Total |
|---|---|---|---|---|---|
| TRAJ | TRAJ1 | 0 | 1 | 0 | 1 |
| TRAJ2 | 1 | 0 | 0 | 1 | |
| TRAJ3 | 0 | 1 | 0 | 1 | |
| TRAJ4 | 1 | 0 | 0 | 1 | |
| TRAJ5 | 0 | 1 | 0 | 1 | |
| TRAJ6 | 1 | 0 | 0 | 1 | |
| TRAJ7 | 1 | 0 | 0 | 1 | |
| TRAJ8 | 1 | 0 | 0 | 1 | |
| TRAJ9 | 1 | 0 | 0 | 1 | |
| TRAJ10 | 1 | 0 | 0 | 1 | |
| TRAJ11 | 1 | 0 | 0 | 1 | |
| TRAJ12 | 1 | 0 | 0 | 1 | |
| TRAJ13 | 1 | 0 | 0 | 1 | |
| TRAJ14 | 1 | 0 | 0 | 1 | |
| TRAJ15 | 1 | 0 | 0 | 1 | |
| TRAJ16 | 1 | 0 | 0 | 1 | |
| TRAJ17 | 1 | 0 | 0 | 1 | |
| TRAJ18 | 1 | 0 | 0 | 1 | |
| TRAJ19 | 1 | 0 | 0 | 1 | |
| TRAJ20 | 1 | 0 | 0 | 1 | |
| TRAJ21 | 1 | 0 | 0 | 1 | |
| TRAJ22 | 1 | 0 | 0 | 1 | |
| TRAJ23 | 1 | 0 | 0 | 1 | |
| TRAJ24 | 1 | 0 | 0 | 1 | |
| TRAJ25 | 1 | 0 | 0 | 1 | |
| TRAJ26 | 1 | 0 | 0 | 1 | |
| TRAJ27 | 1 | 0 | 0 | 1 | |
| TRAJ28 | 1 | 0 | 0 | 1 | |
| TRAJ29 | 1 | 0 | 0 | 1 | |
| TRAJ30 | 1 | 0 | 0 | 1 | |
| TRAJ31 | 1 | 0 | 0 | 1 | |
| TRAJ32 | 1 | 0 | 0 | 1 | |
| TRAJ33 | 1 | 0 | 0 | 1 | |
| TRAJ34 | 1 | 0 | 0 | 1 | |
| TRAJ35 | 1 | 0 | 0 | 1 | |
| TRAJ36 | 1 | 0 | 0 | 1 | |
| TRAJ37 | 1 | 0 | 0 | 1 | |
| TRAJ38 | 1 | 0 | 0 | 1 | |
| TRAJ39 | 1 | 0 | 0 | 1 | |
| TRAJ40 | 1 | 0 | 0 | 1 | |
| TRAJ41 | 1 | 0 | 0 | 1 | |
| TRAJ42 | 1 | 0 | 0 | 1 | |
| TRAJ43 | 1 | 0 | 0 | 1 | |
| TRAJ44 | 1 | 0 | 0 | 1 | |
| TRAJ45 | 1 | 0 | 0 | 1 | |
| TRAJ46 | 1 | 0 | 0 | 1 | |
| TRAJ47 | 1 | 0 | 0 | 1 | |
| TRAJ48 | 1 | 0 | 0 | 1 | |
| TRAJ49 | 1 | 0 | 0 | 1 | |
| TRAJ50 | 1 | 0 | 0 | 1 | |
| TRAJ51 | 0 | 1 | 0 | 1 | |
| TRAJ52 | 1 | 0 | 0 | 1 | |
| TRAJ53 | 1 | 0 | 0 | 1 | |
| TRAJ54 | 1 | 0 | 0 | 1 | |
| TRAJ55 | 1 | 0 | 0 | 1 | |
| TRAJ56 | 1 | 0 | 0 | 1 | |
| TRAJ57 | 1 | 0 | 0 | 1 | |
| TRAJ58 | 1 | 0 | 0 | 1 | |
| TRAJ59 | 1 | 0 | 0 | 1 | |
| TRAJ60 | 1 | 0 | 0 | 1 | |
| TRAJ61 | 1 | 0 | 0 | 1 | |
| TRAJ62 | 1 | 0 | 0 | 1 | |
| TRAJ63 | 1 | 0 | 0 | 1 | |
| TRAJ64 | 1 | 0 | 0 | 1 | |
| TRAJ65 | 1 | 0 | 0 | 1 | |
| TRAJ66 | 1 | 0 | 0 | 1 | |
| TRAJ67 | 1 | 0 | 0 | 1 | |
| TRAJ68 | 1 | 0 | 0 | 1 | |
| TRAJ69 | 1 | 0 | 0 | 1 | |
| TRAJ70 | 1 | 0 | 0 | 1 | |
| TRAJ71 | 1 | 0 | 0 | 1 | |
| TRAJ72 | 1 | 0 | 0 | 1 | |
| TRAJ73 | 1 | 0 | 0 | 1 | |
| TRAJ74 | 1 | 0 | 0 | 1 | |
| TRAJ75 | 1 | 0 | 0 | 1 | |
| TRAJ76 | 1 | 0 | 0 | 1 | |
| TRAJ77 | 1 | 0 | 0 | 1 | |
| TRAJ78 | 1 | 0 | 0 | 1 | |
| TRAJ79 | 1 | 0 | 0 | 1 | |
| TRAJ80 | 1 | 0 | 0 | 1 | |
| TRAJ81 | 1 | 0 | 0 | 1 | |
| TRAJ82 | 1 | 0 | 0 | 1 | |
| TRAJ83 | 1 | 0 | 0 | 1 | |
| TRAJ84 | 1 | 0 | 0 | 1 | |
| TRAJ85 | 1 | 0 | 0 | 1 | |
| TRAJ86 | 1 | 0 | 0 | 1 | |
| TRAJ87 | 1 | 0 | 0 | 1 | |
| TRAJ88 | 1 | 0 | 0 | 1 | |
| TRAJ89 | 1 | 0 | 0 | 1 | |
| TRAJ90 | 1 | 0 | 0 | 1 | |
| TRAJ91 | 1 | 0 | 0 | 1 | |
| TRAJ92 | 1 | 0 | 0 | 1 | |
| TRAJ93 | 1 | 0 | 0 | 1 | |
| TRAJ94 | 1 | 0 | 0 | 1 | |
| TRAJ95 | 1 | 0 | 0 | 1 | |
| TRAJ96 | (+1)* | (+1)* | 0 | 1 | |
| TRAJ97 | 1 | 0 | 0 | 1 | |
| TRAJ98 | 1 | 0 | 0 | 1 | |
| TRAJ99 | 1 | 0 | 0 | 1 | |
| TRAJ100 | 0 | 1 | 0 | 1 | |
| TRAJ101 | 1 | 0 | 0 | 1 | |
| TRAJ102 | 0 | 1 | 0 | 1 | |
| TRAJ103 | 1 | 0 | 0 | 1 | |
| TRAJ104 | 0 | 1 | 0 | 1 | |
| TRAJ105 | 1 | 0 | 0 | 1 | |
| TRAJ106 | 0 | 1 | 0 | 1 | |
| TRAJ107 | 1 | 0 | 0 | 1 | |
| TRAJ108 | 1 | 0 | 0 | 1 | |
| TRAJ109 | 0 | 1 | 0 | 1 | |
| TRAJ110 | 1 | 0 | 0 | 1 | |
| TRAJ111 | 1 | 0 | 0 | 1 | |
| TRAJ112 | 1 | 0 | 0 | 1 | |
| TRAJ113 | 1 | 0 | 0 | 1 | |
| TRAJ114 | 0 | 1 | 0 | 1 | |
| TRAJ115 | 0 | 1 | 0 | 1 | |
| TRAJ116 | 1 | 0 | 0 | 1 | |
| TRAJ117 | 0 | 1 | 0 | 1 | |
| TRAJ118 | 0 | 1 | 0 | 1 | |
| TRAJ119 | 0 | 0 | 1 | 1 | |
| TRAJ120 | 1 | 0 | 0 | 1 | |
| TRAJ121 | 1 | 0 | 0 | 1 | |
| TRAJ122 | 0 | 1 | 0 | 1 | |
| TRAJ123 | 1 | 0 | 0 | 1 | |
| Total | 107(+1)* | 14(+1)* | 1 | 122(+2)* | |
More information:
Gene table: zebrafish (Danio rerio) TRAV
Gene table: zebrafish (Danio rerio) TRAJ
Locus description: zebrafish (Danio rerio) TRA
Potential germline repertoire: zebrafish (Danio rerio) TRD
Created: 01/02/2018
Last updated: 02/10/2025 13:10
Author: Saida Hadi-Saljoqi
Editor: Chantal Ginestoux
Last updated: 02/10/2025 13:10
Author: Saida Hadi-Saljoqi
Editor: Chantal Ginestoux
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