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Print of this table: Folch, G. and Lefranc, M.-P., Exp. Clin. Immunogenet., 17, 42-54 (2000). PMID:10686482
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| Click here to see | Part 2 - Orphons on chromosome 9 (9p21) |
The IMGT allele table refers to the V-REGION polymorphism. It does not include polymorphisms in the other parts of the V-GENE. V-REGION alleles are only described for genes which have at least one Functional or ORF allele. The accession number of a reference sequence is given for each allele.
Nucleotide mutations and amino acid changes in CDR3-IMGT of rearranged sequences are not taken into account for the description of polymorphism.
Click on a gene name to get the alignment of the corresponding V-REGION alleles.
Click on an accession number to get the sequence and additional information (IMGT annotations, IMGT flat file, Coding regions...).
The original L36092 sequence (684973 bp) has been split in
EMBL into three sequences of 267156 bp (U66059), 215422 bp (U66060) and
232650 bp (U66061), L36092 has become secondary accession number of
U66059, U66060 and U66061.
In IMGT, the original sequence
L36092 which is fully annotated has also been kept as primary
accession number, in addition to U66059, U66060 and U66061.
| TRBV subgroup | TRBV
gene name |
Fct | TRBV
allele name |
Accession number | Confirmed by genetics and/or data |
Description of mutations |
| 2 | 2 | F | V2*01 | L36092/U66059 | + | g65 ,R22 |a237 | |
| (F) | V2*02 | M62379 | g65>a,R22>H| | |||
| (F) | V2*03 | M64351 | |a237>g| | |||
| 3 | 3-1 | F | V3-1*01 | U07977 | + | t174 |c181 ,L61 |c225 |c256 ,c258 ,H86 | |
| (F) | V3-1*02 | L06889 | t174>c|c181>a,L61>I|c225>a|c256>a,c258>a,H86>K| | |||
| 4 | 4-1 | F | V4-1*01 | U07977 | + | t93 | |
| (F) | V4-1*02 | M13855 | t93>a| | |||
| 4-2 | F | V4-2*01 | U07975 | + | t263 ,F88 | | |
| (F) | V4-2*02 | X58811 | t263>g,F88>C| | |||
| 4-3 | F | V4-3*01 | U07978 | + | t84 |g183 |t263 ,F88 | | |
| (F) | V4-3*02 | X58812 | |t263>c,F88>S| | |||
| (F) | V4-3*03 | L06888 | |g183>t| | |||
| (F) | V4-3*04 | X57616 | t84>g| | |||
| 5 | 5-1 | F | V5-1*01 | L36092/U66059 | + | a2 ,K1 |a9 |t28 ,Y10 |a64 ,S22 |c137 ,P46 |c215 ,P72 | |
| (F) | V5-1*02 | M14271 | a2>g,K1>R|a9>g|t28>c,Y10>H|a64>g,S22>G|c137>t,P46>L|c215>t,P72>L| | |||
| 5-3 | ORF | V5-3*01 | X61439 | + | g254 ,C85 | | |
| ORF | V5-3*02 | AF009660 | + | g254>a,C85>Y| | ||
| 5-4 | F | V5-4*01 | L36092/U66060 | + | t60 |t212 ,71F |g257 ,86S | | (F) | V5-4*02 | X57615 | |g257>a,86S>N| |
| (F) | V5-4*03 | S50547 | t60>a| | |||
| (F) | V5-4*04 | X58804 | |t212>c,71F>S| | |||
| 5-5 | F | V5-5*01 | L36092/U66060 | + | a54 ,Q18 |g83 ,28G | | |
| (F) | V5-5*02 | X57611 | + | a54>c,Q18>H| | ||
| (F) | V5-5*03 | X58801 | |g83>a,28G>E| | |||
| 5-6 | F | V5-6*01 | L36092/U66060 | + | ||
| 5-7 | ORF | V5-7*01 | L36092/U66060 | + | ||
| 5-8 | F | V5-8*01 | L36092/U66060 | + | t154 ,F52 | | |
| (F) | V5-8*02 | X58803 | t154>c,F52>L| | |||
| 6 | 6-1 | F | V6-1*01 | X61446 | + | |
| 6-2 | F | V6-2*01 | X61445 | + | g75 |a89 ,E30 |a119 ,Y40 |g139 ,G47 |g147 | | |
| 6-3 | F | V6-3*01 | U07978 | + | ||
| 6-4 | F | V6-4*01 | X61653 | + | t2 ,I1 |c52 ,R18 | | |
| F | V6-4*02 | AF009660 | + | t2>c,I1>T|c52>a,R18>S| | ||
| 6-5 | F | V6-5*01 | L36092/U66059/U66060 | + | ||
| 6-6 | F | V6-6*01 | L36092/U66060 | + | a70 ,24T |a88 ,c90 ,N30 |t201 |231c |c286 ,96P | | |
| F | V6-6*02 | AF009662 | a70>g,24T>A| |t201>c| | |||
| (F) | V6-6*03 | X58815 | a70>g,24T>A| | |||
| (F) | V6-6*04 | X74848 | |a88>g,c90>a,N30>E| |231c>t| | |||
| (F) | V6-6*05 | L06892 | a70>g,24T>A| |t201>c| |c286>g,96P>A| | |||
| 6-7 | ORF | V6-7*01 | L36092/U66060 | + | ||
| 6-8 | F | V6-8*01 | L36092/U66060 | + | ||
| 6-9 | F | V6-9*01 | X61447 | + | ||
| 7 | 7-1 | ORF | V7-1*01 | X61444 | + | |
| 7-2 | F | V7-2*01 | X61442 | + | c12 |c135 ,S45 |g251 ,G84 |g313 ,A105 | | |
| F | V7-2*02 | L36190 | + | |c135>g,S45>R|g251>a,G84>E| | ||
| F | V7-2*03 | U07975 | |c135>g,S45>R|g251>a,G84>E|g313>a,A105>T| | |||
| (F) | V7-2*04 | M27387 | c12>t| | |||
| 7-3 | F | V7-3*01 | X61440 | + | t52 ,Y18 |t154 ,F52 |c219 ,N73 |g287 ,R96 |a297 |t302 ,V101 |t310 ,C104 | | |
| ORF | V7-3*02 | M97943 | + | t52>g,Y18>D| |c219>a,N73>K|g287>a,R96>Q| |t310>c,C104>R| | ||
| ORF | V7-3*03 | L33105 | + | t52>g,Y18>D| |c219>a,N73>K|g287>a,R96>Q| |t302>c,V101>A|t310>c,C104>R| | ||
| (F) | V7-3*04 | X74843 | |a297>t| | |||
| (F) | V7-3*05 | M13550 | + | |t154>c,F52>L| | ||
| 7-4 | F | V7-4*01 | L36092/U66060 | + | c255 |t266 ,L89 | | |
| [P] | V7-4*02 | L13762 | c255>del#|t266>c,L89>P| | |||
| 7-6 | F | V7-6*01 | L36092/U66060 | + | t78 | | |
| (F) | V7-6*02 | X58806 | t78>c| | |||
| 7-7 | F | V7-7*01 | L36092/U66060 | + | c89 ,A30 | | |
| (F) | V7-7*02 | X57607 | c89>t,A30>V| | |||
| 7-8 | F | V7-8*01 | M11953 | + | g138 |c286 ,Q96 | | |
| F | V7-8*02 | X61441 | |c286>a,Q96>K| | |||
| (F) | V7-8*03 | M27384 | g138>c| | |||
| 7-9 | F | V7-9*01 | L36092/U66060 | + | g1 ,a2 ,t3 ,D1 |a4 ,T2 |g18 ,Q6 |a19 ,N7 |g33 ,K11 |c134 ,T45 |t137 ,g138 ,L46 |a198 |a208 ,R70 |t226 ,F76 |t256 ,c258 ,F86 |c286 ,Q96 | | |
| (F) | V7-9*02 | M15564 | + | |g33>c,K11>N| | ||
| F | V7-9*03 | AF009663 | + | |a19>g,N7>D| | ||
| (F) | V7-9*04 | M14261 | g1>a,a2>t,t3>a,D1>I|a4>t,T2>S|g18>c,Q6>H| |c134>a,T45>N|t137>c,g138>t,L46>P|a198>g|a208>g,R70>G|t226>a,F76>I| | |||
| (F) | V7-9*05 | M27385 | |t256>c, F86>L| | |||
| (F) | V7-9*06 | X74844 | |t256>c,c258>t,F86>L| | |||
| (F) | V7-9*07 | L14854 | |c286>g,Q96>E| | |||
| 9 | 9 | F | V9*01 | L36092/U66059 | + | g165 ,Q55 | |
| F | V9*02 | AF009660 | g165>c,Q55>H| | |||
| (F) | V9*03 | M27380 | g165>a | | |||
| 10 | 10-1 | F | V10-1*01 | U17050 | + | a180 ,Q60 |g274 ,E92 | |
| F | V10-1*02 | AF009660 | a180>c,Q60>H| | |||
| [P] | V10-1*03 | U17051 | a180>c,Q60>H|g274>t,E92>*| | |||
| 10-2 | F | V10-2*01 | U17049 | + | t228 | | |
| [F] | V10-2*02 | U17048 | t228>c| | |||
| 10-3 | F | V10-3*01 | U03115 | + | c72 |t93 |g156 | | |
| F | V10-3*02 | U17047 | c72>t| | |||
| [F] | V10-3*03 | L33101 | |t93>c|g156>a| | |||
| [F] | V10-3*04 | L33102 | |t93>c| | |||
| 11 | 11-1 | F | V11-1*01 | M33233 | + | |
| 11-2 | F | V11-2*01 | L36092/U66059 | + | g276 |g292 ,D98 | | |
| [F] | V11-2*02 | M33235 | |g292>a,D98>N| | |||
| (F) | V11-2*03 | X58796 | g276>a| | |||
| 11-3 | F | V11-3*01 | U03115 | + | a17 |a45 |a48 |t75 |t128 ,L43 |t279 |g301 ,V101 | | |
| (F) | V11-3*02 | X58797 | |a48>g| |t128>g,L43>R| | |||
| (F) | V11-3*03 | M62377 | a17>g|a45>g| |t75>a| |t279>a|g301>a,V101>M| | |||
| (F) | V11-3*04 | AB305924 | |t128>g,L43>R| | |||
| 12 | 12-3 | F | V12-3*01 | X07192 | + | |
| 12-4 | F | V12-4*01 | K02546 | + | c87 |a269 ,K90 | | |
| (F) | V12-4*02 | M14264 | + | c87>t|a269>g,K90>R| | ||
| 12-5 | F | V12-5*01 | X07223 | + | ||
| 13 | 13 | F | V13-1*01 | U03115 | + | a38 ,K13 |t135 |c157 ,L53 | |
| (F) | V13-1*02 | M62378 | a38>g,K13>R|t135>c|c157>t,L53>F| | |||
| 14 | 14 | F | V14*01 | X06154 | + | g204 | |
| (F) | V14*02 | X57722 | g204>a| | |||
| 15 | 15 | F | V15*01 | U03115 | + | a32 ,Q11 |g172 ,D58 |t267 |a295 ,T99 |t308 ,L103 | |
| (F) | V15*02 | X58800 | + | |a295>g,T99>A| | ||
| (F) | V15*03 | M62376 | a32>g,Q11>R|g172>a,D58>N|t267>a|a295>g,T99>A|t308>a,L103>Q| | |||
| 16 | 16 | F | V16*01 | L26231 | t93 ,Y31 |a160 ,I54 | | |
| P | V16*02 | U03115 | + | t93>g,Y31>*| | ||
| (F) | V16*03 | L26054 | |a160>g,I54>V| | |||
| 17 | 17 | ORF | V17*01 | U03115 | + | |
| 18 | 18 | F | V18*01 | L36092/U66060 | + | |
| 19 | 19 | F | V19*01 | L36092/U66060/U66061 | + | a134 ,D45 |g171 ,Q57 | |
| F | V19*02 | U48259 | a134>t,D45>V|g171>c,Q57>H| | |||
| (F) | V19*03 | M97725 | |g171>c,Q57>H| | |||
| 20 | 20-1 | F | V20-1*01 | M11955 | + | c27 |t28 ,W10 |c76 |c142 ,Q48 |t155 ,L52 |g159 ,M53 |c179 ,S60 | |
| F | V20-1*02 | X72719 | + | |t28>a,W10>R| | ||
| (F) | V20-1*03 | M11954 | |c179>g,S60>C| | |||
| (F) | V20-1*04 | M14263 | |t28>a,W10>R|c76>t|c142>a,Q48>K| | |||
| (F) | V20-1*05 | X57604 | |t28>a,W10>R| |c142>a,Q48>K| | |||
| (F) | V20-1*06 | D13088 | c27>t|t28>a,W10>R| |c142>a,Q48>K| | |||
| (F) | V20-1*07 | X74852 | |t28>a,W10>R| |c142>a,Q48>K|t155>a,L52>Q|g159>c,M53>I| | |||
| 23 | 23-1 | ORF | V23-1*01 | L36092/U66061 | + | |
| 24 | 24-1 | F | V24-1*01 | M11951 | + | |
| 25 | 25-1 | F | V25-1*01 | L36092/U66061 | + | |
| 27 | 27 | F | V27*01 | L36092/U66061 | + | |
| 28 | 28 | F | V28*01 | U08314 | + | |
| 29 | 29-1 | F | V29-1*01 | L36092/U66061 | + | g117 ,M39 |c263 ,T88 | |
| (F) | V29-1*02 | M13847 | |c263>g,T88>S| | |||
| (F) | V29-1*03 | X04926 | g117>a,M39>I| | |||
| 30 | 30 | F | V30*01 | L36092/U66061 | + | t60 |c127 ,R43 |c141 |a142 |g169 ,V57 |g179 ,G60 |c241 ,81P |c264 |t285 | |
| F | V30*02 | Z13967 | |t285>c| | |||
| P | V30*03 | [1] IMGT000027 | + | |c127>t,R43>*| |c241>t,81P>S| | ||
| (F) | V30*04 | M13554 | |g169>a,V57>I|g194>a,G65>D| |c264>t|t285>c| | |||
| (F) | V30*05 | L06893 | t60>c| |c141>a|a142>c| |
References:
| [1] | Charmley, P. et al., J. Exp. Med., 177, 135-143 (1993b). |
Created: 28/11/1997
Last updated: Wednesday, 12-Jun-2024 16:02:41 CEST
Author: Géraldine Folch
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