IMGT Repertoire (IG and TR)


Locus gene order: Western lowland gorilla (Gorilla gorilla gorilla) TRG locus

Relative position (order) of a gene, in a locus from the 5' end of a locus to its 3' end. The number '0' indicates that the relative position is unknown.

Western lowland gorilla (Gorilla gorilla gorilla) TRG locus

IMGT gene name Functionality IMGT gene order
IMGT locus ID: Gorgor_TRG_1
Genome assembly: Kamilah_GGO_V0		 IMGT gene order
IMGT locus ID: Gorgor_TRG_2
Genome assembly: Susie3		 IMGT gene order
IMGT locus ID: Gorgor_TRG_3
Genome assembly: NHGRI_mGorGor1-v1.1-0.2.freeze_mat		 IMGT gene order
IMGT locus ID: Gorgor_TRG_4
Genome assembly: NHGRI_mGorGor1-v1.1-0.2.freeze_pat		 IMGT gene orientation in locus Copy Number Variation (CNV) Haplotypes
TRGV1 ORF 1 1 1 1 direct
TRGV2 F 2 2 2 2 direct
TRGV3 F 3 4 3 4 direct
TRGV4 F 4 4 4 4 direct
TRGV4P P 4.1(1) direct
TRGV5 P F 5 5 5 5 direct
TRGV6 P 6 6 6 6 direct
TRGV7 P 7 7 7 7 direct
TRGV8 F 8 8 8 8 direct
TRGVA P 9 9 9 9 direct
TRGV9 ORF 10 10 10 10 direct
TRGV10 ORF 11 11 11 11 direct
TRGVB P 12 12 12 12 direct
TRGVC P 13 13 13 13 direct
TRGVD P 14 14 14 14 direct
TRGJP1 ORF 15 15 15 15 direct
TRGJP ORF 16 16 16 16 direct
TRGJ1 F 17 17 17 17 direct
TRGC1 F P 18 18 18 18 direct
TRGJP2 ORF 19 19 19 19 direct
TRGJ2 F 20 20 20 20 direct
TRGC2 F P 21 21 21 21 direct
IMGT notes:
  1. (1) The gene is additional in the Susie3 assembly (IMGT000103 accession number) compare to the Kamilah_GGO_v0 assembly (IMGT000102 accession number), to the NHGRI_mGorGor1-v1.1-0.2.freeze_mat assembly (IMGT000169 accession number) and to the NHGRI_mGorGor1-v1.1-0.2.freeze_pat assembly (IMGT000170 accession number).
Created:
27/04/2023
Last updated:
22/09/2023
Authors:
Joanna Maria Rosinska, Chahrazed Debbagh