IMGT Repertoire (IG and TR)
Locus in genome assembly: rainbow trout (Oncorhynchus mykiss) IGH locus on chromosome 13 (locus A)
Rainbow trout (Oncorhynchus mykiss) IGH locus on chromosome 13 (locus A)
| IMGT locus | IGH locus |
|---|---|
| IMGT locus ID: Oncmyk_IGH_1 | |
| Taxonomy | Oncorhynchus mykiss (rainbow trout), taxon:8022 |
| Genome assembly | Omyk_1.0 |
| GenBank assembly ID | GCA_002163495.1 |
| RefSeq assembly ID | GCF_002163495.1 |
| BAC library | |
| Chromosome | 13 |
| Chromosome sequence ID and locus positions (GenBank assembly) | CM007947.1 (48012355-48422510) |
| Chromosome sequence ID and locus positions (RefSeq assembly) | NC_035089.1 (48012355-48422510) |
| IMGT locus orientation on the chromosome | FWD |
| IMGT/LIGM-DB locus reference sequence (ID) | IMGT000043 |
| IMGT/LIGM-DB locus reference sequence length (bp) | 410156 |
Rainbow trout (Oncorhynchus mykiss) IGH locus on chromosome 12 (locus B)
| IMGT locus | IGH locus |
|---|---|
| IMGT locus ID: Oncmyk_IGH_1 | |
| Taxonomy | Oncorhynchus mykiss (rainbow trout), taxon:8022 |
| Genome assembly | Omyk_1.0 |
| GenBank assembly ID | GCA_002163495.1 |
| RefSeq assembly ID | GCF_002163495.1 |
| BAC library | |
| Chromosome | 12 |
| Chromosome sequence ID and locus positions (GenBank assembly) | CM007946.1 (81302817-81805590) |
| Chromosome sequence ID and locus positions (RefSeq assembly) | NC_035088.1 (81302817-81805590) |
| IMGT locus orientation on the chromosome | FWD |
| IMGT/LIGM-DB locus reference sequence (ID) | IMGT000044 |
| IMGT/LIGM-DB locus reference sequence length (bp) | 502774 |
More information:
- Gene table: rainbow trout (Oncorhynchus mykiss) IGHV
- Gene table: rainbow trout (Oncorhynchus mykiss) IGHD
- Gene table: rainbow trout (Oncorhynchus mykiss) IGHJ
- Gene table: rainbow trout (Oncorhynchus mykiss) IGHC
- Potential germline repertoire: rainbow trout (Oncorhynchus mykiss) IGHV, IGHD and IGHJ genes on chromosome 12 and 13
See also:
- Created:
- 17/09/2019
- Last updated:
- 22/09/2023
- Authors:
- Saida Hadi-Saljoqi
