IMGT Repertoire (MH)

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IMGT MHC entry from gene to protein for Oncorhynchus mykiss MH1-B

IMGT gene name and definition

IMGT gene name: Oncorhynchus mykiss MH1-B
IMGT gene definition: major histocompatibility 1 alpha

Chromosomal localization

Locus name: Oncorhynchus mykiss MHC
Chromosome:
Chromosomal localization:

Gene exon/intron organization

Legend:

Length of the exons and introns are in base pairs.
Colors are according to IMGT Color menu for regions and domains

Corresponding protein database accession numbers

Allele names	IMGT/LIGM-DB		UniProt		Protein isoform
Allele names	Accession numbers	Sequence lengths (nt)	Accession numbers	Sequence lengths (AA)
Oncmyk MH1-B*01	AF091779	987	Q31500	329	A
	L63541	987	Q31500	329	A
	AF091784	918	Q9GJB2	306	B
	HE603144	987	G4VUW1	329
	HE603145		G4VUW2	329
	HE603146		G4VUW3	329
	HE603147		G4VUW4	329
	HE603148		G4VUW5	329
	HE603149		G4VUW6	329
	HE603150		G4VUW7	329
	HE603151		G4VUW8	329
Oncmyk MH1-B*02	L63542	987	Q31501	329	A
Oncmyk MH1-B*03	HE603152	987	G4VUW9	329
Oncmyk MH1-B*04	HE603143	987	G4VUW0	329

Genomic sequence

Coding region sequence

The coding region (CODING-REGION) sequence starts from INIT-CODON (or its encoded amino acid) to STOP-CODON (not included).
The nucleotide sequence is extracted from cDNA (c) sequences and/or is built by artificial exon joining from genomic DNA (g) sequences. The amino acid sequence is the translation of the nucleotide sequence.

Oncmyk MH1-B*01: AF091779(g)

Coding region structure

Nucleotide sequence

1        atgataacca caattttaat ttcattcatg cagttttcca tcgtagcccc tcattctctt

61       catcgtcatt gcatcgcaac ccaagggacc ttgtatccga aaaatatcca gttggtaatg

121      atagatgatg tcattgtcta ttactacaac agcagtgctg aacaagaggc cgtagtgccg

181      gaatggttga accaccctga gggaattgaa ttttggcagg aggttcatcg aaatctgaaa

241      tttaatcgat atgtaatgga tactgctgtg agagtaacaa gtgaacatta caatcattca

301      catgatcact tttaccaagc tcatggacgc tgtggatgga agtcagacgg aaccacagag

361      gcctttatga gccatgcata tgacggcaaa gactttgtca gcttcgatgt atcgaccaga

421      acatggacag ctgcagtttc ccatgctgtt ttttacaaaa gaaaaaggga aacagattta

481      gaagatcttg ttaggctggt cattcattac gaatctggat gcatccgttg gctggagaaa

541      ctgttagagt ttagcgttac agttcgagaa cccaaagtcc ctgcggtgag tctgtttgag

601      agaccgcctc atggcaactc cgaggtggag gtcacatgtc atgtgacagg gttctaccct

661      cgggcggtgc aggtggagtg gctgggggca gaggggcttc ccatggtaga cggggtgaac

721      agtggcgagg tgctgcccaa cggagacggt tcataccagc taaggaagag cctgactgtc

781      ccacaggaag cccaggacac ccagagctac agctgcctgg tgctccacag cagtatagct

841      gggaacatca cagtaacctg ggctccaaag aagaacctgg ccaatgtgct catggctata

901      gtcatcattg tatctgtagt cttgatactc actgtcctat tcaagtattt agtatggagg

961      agagcagtag cacaaaaccc aagaggatga

Nucleotide sequence in FASTA format (without gaps) Oncmyk MH1-B*01

Amino acid sequence

1        MITTILISFM QFSIVAPHSL HRHCIATQGT LYPKNIQLVM IDDVIVYYYN SSAEQEAVVP

61       EWLNHPEGIE FWQEVHRNLK FNRYVMDTAV RVTSEHYNHS HDHFYQAHGR CGWKSDGTTE

121      AFMSHAYDGK DFVSFDVSTR TWTAAVSHAV FYKRKRETDL EDLVRLVIHY ESGCIRWLEK

181      LLEFSVTVRE PKVPAVSLFE RPPHGNSEVE VTCHVTGFYP RAVQVEWLGA EGLPMVDGVN

241      SGEVLPNGDG SYQLRKSLTV PQEAQDTQSY SCLVLHSSIA GNITVTWAPK KNLANVLMAI

301      VIIVSVVLIL TVLFKYLVWR RAVAQNPRG*

Amino acid sequence in FASTA format (without gap) Oncmyk MH1-B*01

Legend:

Colors are according to IMGT Color menu for regions and domains
Nucleotide and amino acid letters (in bold) in purple, green or blue are according to IMGT Color menu for splicing types.

IMGT links

IMGT Repertoire

Correspondence between nomenclatures (MHC): Teleostei
Chromosomal localization: Vertebrate species (table)
Protein displays (MHC): G-DOMAIN, C-LIKE-DOMAIN
Alignment of alleles:
Strand and loop lengths (MHC): G-DOMAIN, C-LIKE-DOMAIN
Collier de perles (MHC): G-DOMAIN, C-LIKE-DOMAIN

IMGT databases

IMGT/3Dstructure-DB:

External links

Genome databases

Entrez Gene:

Sequence databases

EMBL: many entries (tables above)
GenBank: many entries (tables above)
DDBJ: many entries (tables above)
Swiss-Prot: many entries (tables above)
TrEMBL: many entries (tables above)
NCBI: many entries (tables above)

Structure databases

PDB: