IMGT MHC entry from gene to protein for Mus musculus MH1-L

Citing IMGT MHC entry for MH1-L

Lefranc, M.-P., Duprat, E., Kaas, Q., Tranne, M., Thiriot, A. and Lefranc, G. IMGT unique numbering for MHC groove G-DOMAIN and MHC superfamily (MhcSF) G-LIKE-DOMAIN, Dev. Comp. Immunol., 29, 917-938 (2005). PMID:15936075 pdf with permission from Elsevier

IMGT gene name and definition

Chromosomal localization

Gene exon/intron organization

MH1-L Gene exon/intron organization
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Corresponding protein database accession numbers

Allele names Accession numbers Number of coding nucleotides Number of coding amino acids Protein isoform
Nucleotide databases EMBL Protein databases
MH1-L*01 M33151 P01897 1077pb 359aa A
L00128 311pb 103aa
L00129 33pb 11aa
MH1-L*01 ou *03 ou *04 ou *06 X52915 O19453 467pb 155aa A
M60774 468pb 156aa
M60775 Q61891 467pb 155aa
MH1-L*02 M69068 Q61891 1077pb 359aa A
MH1-L*03 X14091 Q61643 610pb 203aa
X52916 O19453 467pb 155aa A
MH1-L*04 V00749 P01897 61pb 20aa A
V00750 543pb 181aa
V00751 467pb 155aa
MH1-L*05 V00752 P01897 918pb 306aa A
L00127 607pb 202aa
MH1-L*06 M37682 Q31168 1013pb 337aa A
MH1-L*07 M58595 None 880pb 293aa A
IMGT notes:
  1. (1) In-frame DELETION at 3' end of L-REGION (L14>del# ; P16>del# and A21>del>#).In-frame DELETION in 5' of G-ALPHA1 (A12>del(1AA)).
  2. (2) Incomplete exon sequence (series of "N") in V00752.1 (2570 bp,14-NOV-2006). In-frame DELETION at 3' end of L-REGION (L14>del# ; P16>del# and A21>del>#).
  3. (3) Partial (5' part of EX2 and 3' part of EX7 missing).
  4. (4) Partial (5' part EX5 missing).
  5. (5) In-frame DELETION at 3' end of L-REGION (L14>del# ; P16>del# and A21>del>#).

Genomic sequence

Coding region sequence

The coding region (CODING-REGION) sequence starts from INIT-CODON (or its encoded amino acid) to STOP-CODON (not included).
The nucleotide sequence is extracted from cDNA (c) sequences and/or is built by artificial exon joining from genomic DNA (g) sequences. The amino acid sequence is the translation of the nucleotide sequence.

MH1-L*01: M33151(c)

Nucleotide sequence

1        atggctccgc gcacgctgct cctgctgctg gcggccgccc tggccccgac tcagacccgc

61       gcgggcccac actcgatgcg gtatttcgag accgccgtgt cccggcccgg cctcggggag

121      ccccggtaca tctctgtcgg ctatgtggac aacaaggagt tcgtgcgctt cgacagcgac

181      gcggagaatc cgagatatga gccgcaggcg ccgtggatgg agcaggaggg gccggagtat

241      tgggagcgga tcacgcagat cgccaagggc caggagcagt ggttccgagt gaacctgagg

301      accctgctcg gctactacaa ccagagcgcg ggcggcactc acacactcca gtggatgtac

361      ggctgtgacg tggggtcgga cgggcgcctc ctccgcgggt acgagcagtt cgcctacgac

421      ggctgcgatt acatcgccct gaacgaagac ctgaaaacgt ggacggcggc ggacatggcg

481      gcgcagatca cccgacgcaa gtgggagcag gctggtgctg cagagtatta cagggcctac

541      ctggagggcg agtgcgtgga gtggctccac agatacctga agaacgggaa cgcgacgctg

601      ctgcgcacag attccccaaa ggcacatgtg acccatcacc ccagatctaa aggtgaagtc

661      accctgaggt gctgggccct gggcttctac cctgctgaca tcaccctgac ctggcagttg

721      aatggggagg agctgaccca ggacatggag cttgtggaga ccaggcctgc aggggatgga

781      accttccaga agtgggcatc tgtggtggtg cctcttggga aggagcagaa ttacacatgc

841      cgtgtgtacc atgaggggct gcctgagccc ctcaccctga gatgggagcc tcctccgtcc

901      actgactctt acatggtgat cgttgctgtt ctgggtgtcc ttggagctat ggccatcatt

961      ggagctgtgg tggcttttgt gatgaagaga aggagaaaca caggtggaaa aggaggggac

1021     tatgctctgg ctccaggctc ccagagctct gaaatgtctc tccgagattg taaagcgtga
Nucleotide sequence in FASTA format (without gaps) MH1-L*01

Amino acid sequence

1        MAPRTLLLLL AAALAPTQTR AGPHSMRYFE TAVSRPGLGE PRYISVGYVD NKEFVRFDSD

61       AENPRYEPQA PWMEQEGPEY WERITQIAKG QEQWFRVNLR TLLGYYNQSA GGTHTLQWMY

121      GCDVGSDGRL LRGYEQFAYD GCDYIALNED LKTWTAADMA AQITRRKWEQ AGAAEYYRAY

181      LEGECVEWLH RYLKNGNATL LRTDSPKAHV THHPRSKGEV TLRCWALGFY PADITLTWQL

241      NGEELTQDME LVETRPAGDG TFQKWASVVV PLGKEQNYTC RVYHEGLPEP LTLRWEPPPS

301      TDSYMVIVAV LGVLGAMAII GAVVAFVMKR RRNTGGKGGD YALAPGSQSS EMSLRDCKA*
Amino acid sequence in FASTA format (without gap) MH1-L*01

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