IMGT Repertoire (MH)
Other MHC entries
- Mus musculus: MH2-AA
IMGT MHC entry from gene to protein for Mus musculus MH2-AB
IMGT gene name and definition
- IMGT gene name: Mus musculus MH2-AB
- IMGT gene definition: histocompatibility 2, class II antigen A, beta 1
Chromosomal localization
- Locus name:
- Chromosome: 17
- Chromosomal localization: 17B1; 17 18.64cM
Gene exon/intron organization
Legend:
- Length of the exons and introns are in base pairs.
- Colors are according to IMGT Color menu for regions and domains
Corresponding protein database accession numbers
| MH2-AB | Accession numbers | Number of amino acids | Protein isoform | |
|---|---|---|---|---|
| Nucleotide databases | Protein databases | |||
| MH2-AB*01 | AF027865 | P14483 | 265aa | |
| M27548 | Q31140 | |||
| MH2-AB*03 | K00008 | P01921 | 265aa | |
| MH2-AB*06 | AK156899 | Q31135 | 263aa | |
| M15848 | 263aa | |||
| MH2-AB*10 | AF065913 | O78197 | 252aa | |
| MH2-AB*12 | AF065912 | O62867 | 250aa | |
| MH2-AB*13 | M13537 | P06342 | 265aa | |
| MH2-AB*14 | M13538 | P06343 | 263aa | |
| MH2-AB*15 | M13539 | Q31184 | 263aa | |
| MH2-AB*16 | M63652, M86503, M86504, M86505, M86506, M86507 | Q31131 | 263aa | |
| MH2-AB*17 | M13540 | P06345 | 263aa | |
| MH2-AB*20 | M13541 | P06346 | 252aa | |
| MH2-AB*22 | M21932 | O19470 | 231aa | |
IMGT notes:
- (1) Many EMBL entries. For retrieval of EMBL entries, search EMBL server with EMBL accession numbers (tables above).
Genomic sequence
Coding region sequence
The coding region (CODING-REGION)
sequence starts from INIT-CODON
(or its encoded amino acid) to STOP-CODON
(not included).
The nucleotide sequence is extracted from cDNA (c) sequences and/or is
built by artificial exon joining from genomic DNA (g) sequences.
The amino acid sequence is the translation of the nucleotide sequence.
MH2-AB*01: AF027865(g)
Nucleotide sequence
1 atggctctgc agatccccag cctcctcctc tcggctgctg tggtggtgct gatggtgctg 61 agcagcccag ggactgaggg cggagactcc gaaaggcatt tcgtgtacca gttcatgggc 121 gagtgctact tcaccaacgg gacgcagcgc atacgatatg tgaccagata catctacaac 181 cgggaggagt acgtgcgcta cgacagcgac gtgggcgagc accgcgcggt gaccgagctg 241 gggcggccag acgccgagta ctggaacagc cagccggaga tcctggagcg aacgcgggcc 301 gagctggaca cggtgtgcag acacaactac gaggggccgg agacccacac ctccctgcgg 361 cggcttgaac agcccaatgt cgtcatctcc ctgtccagga cagaggccct caaccaccac 421 aacactctgg tctgctcagt gacagatttc tacccagcca agatcaaagt gcgctggttc 481 cggaatggcc aggaggagac ggtgggggtc tcatccacac agcttattag gaatggggac 541 tggaccttcc aggtcctggt catgctggag atgacccctc ggcggggaga ggtctacacc 601 tgtcacgtgg agcatcccag cctgaagagc cccatcactg tggagtggag ggcacagtct 661 gagtctgcct ggagcaagat gttgagcggc atcgggggct gcgtgcttgg ggtgatcttc 721 ctcgggcttg gccttttcat ccgtcacagg agtcagaaag gacctcgagg ccctcctcca 781 gcagggctcc tgcagtga
Nucleotide sequence in FASTA format (without gaps)
MH2-AB*01
Amino acid sequence
1 MALQIPSLLL SAAVVVLMVL SSPGTEGGDS ERHFVYQFMG ECYFTNGTQR IRYVTRYIYN 61 REEYVRYDSD VGEHRAVTEL GRPDAEYWNS QPEILERTRA ELDTVCRHNY EGPETHTSLR 121 RLEQPNVVIS LSRTEALNHH NTLVCSVTDF YPAKIKVRWF RNGQEETVGV SSTQLIRNGD 181 WTFQVLVMLE MTPRRGEVYT CHVEHPSLKS PITVEWRAQS ESAWSKMLSG IGGCVLGVIF 241 LGLGLFIRHR SQKGPRGPPP AGLLQ*
Amino acid sequence in FASTA format (without gap)
MH2-AB*01
Legend:
- Colors are according to IMGT Color menu for regions and domains
- Nucleotide and amino acid letters (in bold) in purple, green or blue are according to IMGT Color menu for splicing types.
IMGT links
IMGT Repertoire
- Chromosomal localization: Vertebrate species (table)
- Protein displays (MHC): G-DOMAIN, C-LIKE-DOMAIN
- Alignment of alleles:
- Strand and loop lengths (MHC): G-DOMAIN, C-LIKE-DOMAIN
- Collier de perles (MHC): G-DOMAIN, C-LIKE-DOMAIN
IMGT Scientific chart
- Numbering: G-DOMAIN, C-LIKE-DOMAIN
- Sequence and 3D structure identification and description: Label definitions for IG, TR and MHC, Standardized keywords and labels for IG, TR, MHC, RPI and FPIA
- Nomenclature: IMGT description of mutations
IMGT Index
IMGT Education
- Tutorials: Présentation du complexe majeur d'histocompatibilité, La superfamille des immunoglobulines (IgSF), La superfamille du complexe majeur d'histocompatibilité (MhcSF)
IMGT databases
- IMGT/3Dstructure-DB: 1d9k, 1es0, 1f3j, 1fne, 1fng, 1i3r, 1iak, 1iao, 1iea, 1ieb, 1jl4, 1k2d, 1kt2, 1lnu, 1muj, 1r5v, 1r5w, 1u3h
External links
Nomenclature
- MGI: 95895
Genome databases
- Entrez Gene: 14960
Sequence databases
- EMBL: many entries (tables above ) (1)
- GenBank:
- DDBJ:
- Swiss-Prot: P14483, P01921, P06342, P06343, P06345, P06346
- TrEMBL: Q31140, Q31135, Q31135, O78197, O62867, Q31184, Q31131, O19470
- NCBI:
Structure databases
Created: 18/10/2006
Last updated: Friday, 22-Sep-2023 18:31:35 CEST
Authors: Phani vijay Garapati and Marie-Paule Lefranc
Editor: Chantal Ginestoux
Last updated: Friday, 22-Sep-2023 18:31:35 CEST
Authors: Phani vijay Garapati and Marie-Paule Lefranc
Editor: Chantal Ginestoux
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