IMGT Repertoire (MH)

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Other MHC entries

Mus musculus: MH2-EB

IMGT MHC entry from gene to protein for Mus musculus MH2-EA

IMGT gene name and definition

IMGT gene name: Mus musculus MH2-EA
IMGT gene definition: histocompatibility 2, class II antigen E, alpha

Chromosomal localization

Locus name:
Chromosome: 17
Chromosomal localization: 17B1; 17 18.7cM

Gene exon/intron organization

Legend:

Length of the exons and introns are in base pairs.
Colors are according to IMGT Color menu for regions and domains

Corresponding protein database accession numbers

Allele name	Accession numbers		Number of amino acids	Protein isoform
Allele name	Nucleotide databases	Protein databases	Number of amino acids	Protein isoform
MH2-EA*01	K00971	Sw: P01904	255aa
MH2-EA*04	BC106107	Tr: Q3KQP6	255aa
MH2-EA*06	V00833, V00834	Sw: P04224	255aa
MH2-EA*07	U13648	Tr: Q31092	255aa
MH2-EA*08	NM_010381	NP_034511	255aa

IMGT notes:

(1) No EX1 and partial EX4.
(2) Sequence has been extracted from the genome annotation reference sequence NT_039649. Partial no EX1.

IMGT references:

[1] Hyldig-Nielsen, J.J. et al, Nucleic Acids Res. 11, 5055-5071 (1983). PMID:6308570
[2] Cao, T.M. et al, Proc. Natl. Acad. Sci. U.S.A. 100, 11571-11576 (2003). PMID:14504392
[3] Mathis, D.J. et al, Cell 32, 745-754 (1983). PMID:6403249
[4] Tacchini-Cottier, F. et al, Int. Immunol. 7, 1459-1471 (1995).. PMID:7495754

Genomic sequence

Coding region sequence

The coding region (CODING-REGION) sequence starts from INIT-CODON (or its encoded amino acid) to STOP-CODON (not included).
The nucleotide sequence is extracted from cDNA (c) sequences and/or is built by artificial exon joining from genomic DNA (g) sequences. The amino acid sequence is the translation of the nucleotide sequence.

MH2-EA*02: K00971(g)

Nucleotide sequence

1        atggccacaa ttggagccct gctgttaaga tttttcttca ttgctgttct gatgagctcc

61       cagaagtcat gggctatcaa agaggaacac accatcatcc aggcggagtt ctatctttta

121      ccagacaaac gtggagagtt tatgtttgac tttgacggcg atgagatttt ccatgtagac

181      attgaaaagt cagagaccat ctggagactt gaagaatttg caaagtttgc cagctttgag

241      gctcagggtg cactggctaa tatagctgtg gacaaagcta acctggatgt catgaaagag

301      cgttccaaca acactccaga tgccaacgtg gccccagagg tgactgtact ctccagaagc

361      cctgtgaacc tgggagagcc caacatcctc atctgtttca ttgacaagtt ctcccctcca

421      gtggtcaatg tcacctggtt ccggaatgga cggcctgtca ccgaaggcgt gtcagagaca

481      gtgtttctcc cgagggacga tcacctcttc cgcaaattcc actatctgac cttcctgccc

541      tccacagatg atttctatga ctgtgaggtg gatcactggg gtttggagga gcctctgcgg

601      aagcactggg agtttgaaga gaaaaccctc ctcccagaaa ctacagagaa tgtcgtgtgt

661      gctcttgggt tgtttgtggg tctggtgggc atcgttgtgg ggattatcct catcatgaag

721      ggtattaaaa aacgcaatgt tgtagaacgc cgacaaggag ccctgtga

Nucleotide sequence in FASTA format (without gaps) MH2-EA*02

Amino acid sequence

1        MATIGALLLR FFFIAVLMSS QKSWAIKEEH TIIQAEFYLL PDKRGEFMFD FDGDEIFHVD

61       IEKSETIWRL EEFAKFASFE AQGALANIAV DKANLDVMKE RSNNTPDANV APEVTVLSRS

121      PVNLGEPNIL ICFIDKFSPP VVNVTWFRNG RPVTEGVSET VFLPRDDHLF RKFHYLTFLP

181      STDDFYDCEV DHWGLEEPLR KHWEFEEKTL LPETTENVVC ALGLFVGLVG IVVGIILIMK

241      GIKKRNVVER RQGAL*

Amino acid sequence in FASTA format (without gap) MH2-EA*02

Legend:

Colors are according to IMGT Color menu for regions and domains
Nucleotide and amino acid letters (in bold) in purple, green or blue are according to IMGT Color menu for splicing types.