IMGT Repertoire (RPI)
Alignment of alleles: Human PRETA1
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Accession Allele EXON 1
number name
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
M A G T W L L L L L A L G C P A L P T
AF084941, PRETA1*01(EX1) ATG GCC GGT ACA TGG CTG CTA CTT CTC CTG GCC CTT GGG TGT CCA GCC CTA CCC ACA G
U38996 , PRETA1*01 (cDNA) -- --- --- --- --- --- --- --- -
U36759 , PRETA1*01 (cDNA) (1) --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -
AF101436, PRETA1*01 (cDNA) (2) --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -
AF165312, PRETA1*01 (cDNA) (4) --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -
AL035587, PRETA1*01 (3) --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -
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Accession Allele EXON 2
number name
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1.5 1.4 1.3 1.2 1.1 1 2 3 4 5 6 7 8 9 10 11
G V G G T P F P S L A P P I M L
AF084941, PRETA1*01 (EX2) GT GTG GGC GGC ACA CCC TTT CCT TCT CTG GCC CCA CCA ATC ATG CTG
U38996 , PRETA1*01 (cDNA) -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
U36759 , PRETA1*01 (cDNA) -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
AF165312, PRETA1*01 (cDNA)
AL035587, PRETA1*01 -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
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Accession Allele EXON 3
number name
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_____AB_____ ________
15.1 15.3
12 13 14 15 15.2 16 17 18 19 20 21 22 23 24 25 26 27 28
L V D G K Q Q M V V V C L V L D V
AF084941, PRETA1*01 CTG GTG GAT GGA ... ... ... AAG CAG CAG ATG GTG GTG GTC TGC CTG GTC CTT GAT GTT
U38996 , PRETA1*01 (cDNA) --- --- --- --- ... ... ... --- --- --- --- --- --- --- --- --- --- --- --- ---
U36759 , PRETA1*01 (cDNA) --- --- --- --- ... ... ... --- --- --- --- --- --- --- --- --- --- --- --- ---
AF165312, PRETA1*01 (cDNA) GGT CCT GTT TCC TTC CCT TCC TCA
AL035587, PRETA1*01 --- --- --- --- ... ... ... --- --- --- --- --- --- --- --- --- --- --- --- ---
_______________BC_______________ _________CD_________
45.1 45.3 45.5
29 30 31 32 33 34 35 36 39 40 41 42 43 44 45 45.2 45.4
A P P G L D S P I W F S A G N G S A L
AF084941, PRETA1*01 GCA CCC CCT ... GGC CTT GAC AGC CCC ATC TGG TTC TCA GCC GGC AAT GGC AGT GCA CTG
U38996 , PRETA1*01 (cDNA) --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
U36759 , PRETA1*01 (cDNA) --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
AF165312, PRETA1*01 (cDNA) CCA GAG GCT ... GCC ACA ACA GG- --- --- --- --- --- --- --- --- --- --- --- ---
AL035587, PRETA1*01 --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
________ ___________________DE___________________
45.7 84.1 84.3 84.5 84.7 85.6
45.6 77 78 79 80 81 82 83 84 84.2 84.4 84.6 85.7 85.5
D A F T Y G P S P A T D
AF084941, PRETA1*01 ... ... GAT GCC TTC ACC TAT GGC CCT TCC CCA GCA ACG GAT ... ... ... ... ... ...
U38996 , PRETA1*01 (cDNA) ... ... --- --- --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ...
U36759 , PRETA1*01 (cDNA) ... ... --- --- --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ...
AF165312, PRETA1*01 (cDNA) ... ... --- --- --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ...
AL035587, PRETA1*01 ... ... --- --- --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ...
________________ ___EF___
85.4 85.2 96.1
85.3 85.1 85 86 87 88 89 90 91 92 93 94 95 96 96.2 97 98
G T W T N L A H L S L P S E E L A S
AF084941, PRETA1*01 GGC ACC TGG ACC AAC TTG GCC CAT CTC TCC CTG CCT TCT GAG GAG CTG ... ... GCA TCC
U38996 , PRETA1*01 (cDNA) --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ... ... --- ---
U36759 , PRETA1*01 (cDNA) --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ... ... --- ---
AF165312, PRETA1*01 (cDNA) --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ... ... --- ---
AL035587, PRETA1*01 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ... ... --- ---
_________________________FG_________________________
99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118
W E P L V C H T G P G A E G H S R S T
AF084941, PRETA1*01 TGG GAG CCT TTG GTC TGC CAC ACT GGG CCT GGG GCT ... GAG GGT CAC AGC AGG AGT ACA
U38996 , PRETA1*01 (cDNA) --- --- --- --- --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- ---
U36759 , PRETA1*01 (cDNA) --- --- --- --- --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- ---
AF165312, PRETA1*01 (cDNA) --- --- --- --- --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- ---
AL035587, PRETA1*01 --- --- --- --- --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- ---
119 120 121 122 123 124
Q P M H L S
AF084941, PRETA1*01 CAG CCC ATG CAT CTG TCA G
U38996 , PRETA1*01 (cDNA) --- --- --- --- --- --- -
U36759 , PRETA1*01 (cDNA) --- --- --- --- --- --- -
AF165312, PRETA1*01 (cDNA) --- --- --- --- --- --- -
AL035587, PRETA1*01 --- --- --- --- --- --- -
___________________________________________________________________________________________________________________________________
Accession Allele EXON 3
number name
___________________________________________________________________________________________________________________________________ 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15
G E A S T A R T C P Q E P L R
AF084941, PRETA1*01 (EX3) GA GAG GCT TCT ACA GCC AGG ACC TGC CCC CAG GAG CCT CTC AGG G
U38996 , PRETA1*01 (cDNA) -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -
U36759 , PRETA1*01 (cDNA) -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -
AF101436, PRETA1*01 (cDNA) -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -
AF165312, PRETA1*01 (cDNA) -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -
AL035587, PRETA1*01 -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -
___________________________________________________________________________________________________________________________________
Accession Allele EXON 4
number name
___________________________________________________________________________________________________________________________________ 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
G T P G G A L W L G V L R L L L F K L L
AF084941, PRETA1*01 (EX4) GG ACA CCG GGT GGG GCG CTG TGG CTG GGG GTC CTG CGG CTG CTG CTC TTC AAG CTG CTG
U38996 , PRETA1*01 (cDNA) -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
U36759 , PRETA1*01 (cDNA) -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
AF101436, PRETA1*01 (cDNA) -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
AF165312, PRETA1*01 (cDNA) -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
AL035587, PRETA1*01 -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40
L F D L L L T C S C L C D P A G P L P S
AF084941, PRETA1*01 (EX4) CTG TTT GAC CTG CTC CTG ACC TGC AGC TGC CTG TGC GAC CCC GCG GGC CCG CTG CCT TCC
U38996 , PRETA1*01 (cDNA) --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
U36759 , PRETA1*01 (cDNA) --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
AF101436, PRETA1*01 (cDNA) --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
AF165312, PRETA1*01 (cDNA) --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
AL035587, PRETA1*01 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60
P A T T T R L R A L G S H R L H P A T E
AF084941, PRETA1*01 (EX4) CCC GCA ACC ACC ACC CGC CTG CGA GCC CTC GGC TCC CAT CGA CTG CAC CCG GCC ACG GAG
U38996 , PRETA1*01 (cDNA) --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
U36759 , PRETA1*01 (cDNA) --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
AF101436, PRETA1*01 (cDNA) --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
AF165312, PRETA1*01 (cDNA) --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
AL035587, PRETA1*01 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80
T G G R E A T S S P R P Q P R D R R W G
AF084941, PRETA1*01 (EX4) ACT GGG GGA CGA GAG GCC ACC AGC TCA CCC AGA CCC CAG CCT CGG GAC CGC CGC TGG GGT
U38996 , PRETA1*01 (cDNA) --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
U36759 , PRETA1*01 (cDNA) --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
AF101436, PRETA1*01 (cDNA) --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
AF165312, PRETA1*01 (cDNA) --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
AL035587, PRETA1*01 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
D T P P G R K P G S P V W G E G S Y L S
AF084941, PRETA1*01 (EX4) GAC ACC CCT CCG GGT CGG AAG CCC GGG AGC CCA GTA TGG GGG GAA GGG TCT TAC CTC AGC
U38996 , PRETA1*01 (cDNA) --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
U36759 , PRETA1*01 (cDNA) --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
AF101436, PRETA1*01 (cDNA) --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
AF165312, PRETA1*01 (cDNA) --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
AL035587, PRETA1*01 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120
S Y P T C P A Q A W C S R S R L R A P S
AF084941, PRETA1*01 (EX4) AGT TAC CCC ACT TGC CCA GCA CAG GCC TGG TGC TCA AGA TCT CGC CTC AGG GCT CCT TCC
U38996 , PRETA1*01 (cDNA) --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
U36759 , PRETA1*01 (cDNA) --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
A
AF101436, PRETA1*01 (cDNA) (2) --- --- --- --- --- --- --- --- --- --- --- --- --- --- GC- --- --- --- --- ---
AF165312, PRETA1*01 (cDNA) --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
A
AL035587, PRETA1*01 (3) --- --- --- --- --- --- --- --- --- --- --- --- --- --- GC- --- --- --- --- ---
121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141
S S L G A F F A G D L P P P L Q A G A A *
AF084941, PRETA1*01 (EX4) TCC AGT CTT GGA GCA TTT TTT GCA GGT GAC CTG CCT CCT CCT CTG CAG GCT GGA GCT GCC
U38996 , PRETA1*01 (cDNA) --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
R
U36759 , PRETA1*01 (cDNA) (1) --- --- --- --- --- --- --- CG- --- --- --- --- --- --- --- --- --- --- --- ---
AF101436, PRETA1*01 (cDNA) --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
AF165312, PRETA1*01 (cDNA) --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
AL035587, PRETA1*01 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
Legend:
- When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters.
- Dashes indicate identical nucleotides. Dots indicate gaps by comparison to the longest sequence.
- Blanks indicate partial sequences (blanks at the 5' and/or 3' end).
- Exon names are shown between parentheses on the first line.
- Cysteine involved in the disulfide bridge are shown in purple.
- STOP-CODON is indicated by an asterisk.
- N-glycosylation sites (NXS/T, where X is different from P) are underlined.
| (1) | Mutations in EX4 are probably typing or sequencing errors. |
| (2) | EX1 is splicedwith EX3, there is no EX2. Mutations in EX4 (shown in italics and in black)are probably typing or sequencing errors. |
| (3) | This sequence is in complementary inverted orientation. Mutations in EX4 (shown in italics and in black) are probably typing or sequencing errors. |
| (4) | Truncated EX2 with completely divergent 5' region. |
See also:
- IMGT Repertoire:
- IMGT Scientific chart:
- IMGT Index:
- IMGT Education (FR):
- Tools:
Created: 28/02/2003
Last updated: Friday, 22-Sep-2023 18:32:06 CEST
Author: Dominique Scaviner
Editor: Elodie Gemrot
Last updated: Friday, 22-Sep-2023 18:32:06 CEST
Author: Dominique Scaviner
Editor: Elodie Gemrot
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