IMGT Repertoire (IG and TR)

Collier de Perles: Rhesus monkey (Macaca mulatta) IGHC

IGHA*01 CH1 (AY039245)

Polymorphisms:

  • IGHA*02 (AY039246): R 1, E 35, G 120
  • IGHA*03 (AY039247): R 1, C 10, S 11, I 21, E 35, S 116
  • IGHA*04 (AY039248): R 1, N 8, C 10, S 11, E 35, S 84, S 116
  • IGHA*05 (AY039249): R 1, N 8, C 10, S 11, E 35, D 45.2, S 84, S 116
  • IGHA*06 (AY039250): R 1, E 35, G 120
  • IGHA*07 (AY039251): R 1, E 35, S 84, A 115
  • IGHA*08 (AY039252): R 1, E 35, S 84, A 115
  • IGHA*14 (AY294614): S 1, N 8, C 10, S 11, E 35, D 45.2, S 84, S 116
  • IGHA*15 (AY294616): S 84, T 99, S 116
  • IGHA*16 (AY294617): S 84, T 94, T 99, S 116
  • IGHA*18 (AY294620): S 84, S 116, X 123
  • IGHA*19 (AY294621): S 84, S 116
  • IGHA*20 (AY294623): S 84
  • IGHA*21 (AY294615): S 1, K 10, D 16, G 17, E 35, N 42, S 84, T 94, T 99, S 116, R 122
  • IGHA*22 (IMGT000064): R 1, N 8, C 10, S 11, E 35, D 45.2, S 84, S 116

On one layer

On two layers

Colors are according to IMGT Color menu for sequence alignments and Color menu for CDR-IMGT

Legend:
  • Amino acids are shown in the one-letter abbreviation.
  • Hydrophobic amino acids (hydropathy index with positive value) and Tryptophan (W) found at a given position in more than 50% of analysed IG and TR sequences are shown in blue.
  • All Proline (P) are shown in yellow.
  • Missing positions in IMGT Colliers de Perles based on 3D structures may be due to incomplete experimental data.
  • Arrows indicate the direction of the beta sheets and their different designations in 3D structures. This information has to be used carefully if not supported by experimental data.
  • The positions 26, 39 and 104 are shown in squares by homology with the corresponding positions in the V-REGIONs. Positions 45 and 77 which delimit the characteristic "CD" strand of the C-DOMAINs, and position 118 which corresponds structurally to J-PHE or J-TRP of the J-REGION, are also shown in squares.
  • Hatched circles or squares correspond to missing positions according to the IMGT unique numbering for C-DOMAINs (Lefranc et al. 2005 PMID: 15572068 PDF).
  • In green, position of amino acid changes involved in allotype polymorphism.
  • Strands of the beta-pleated sheet localized at the interface between domains are shown in bold.
  • The hinge six amino acids which belongs to the same exon as the CH2 domain are not shown.
  • The CHS region is not shown.
See also:
Created:
23/02/2011
Last updated:
Wednesday, 31-Jul-2024 18:17:32 CEST
Authors:
François Ehrenmann, Chantal Ginestoux and Patrice Duroux