IMGT Repertoire (IG and TR)
Locus in genome assembly: human (Homo sapiens) IGH
Human (Homo sapiens) IGH locus on chromosome 14q32.33
| IMGT locus | IGH locus | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| IMGT locus ID: Homosap_IGH_1 | IMGT locus ID: Homosap_IGH_2 | IMGT locus ID: Homosap_IGH_3 | IMGT locus ID: Homosap_IGH_4 | IMGT locus ID: Homosap_IGH_5 | IMGT locus ID: Homosap_IGH_6 | IMGT locus ID: Homosap_IGH_7 | IMGT locus ID: Homosap_IGH_8 | IMGT locus ID: Homosap_IGH_9 | IMGT locus ID: Homosap_IGH_10 | IMGT locus ID: Homosap_IGH_11 | ||||
| Taxonomy | Homo sapiens (human), taxon:9606 | Homo sapiens (human), taxon:9606, isolate: CHM13, haploid cell line, female, hydatidiform mole | Homo sapiens (human), taxon:9606 | Homo sapiens (human), taxon:9606, isolate: mHomSap3, maternal haplotype, haploid (principal haplotype of diploid), male, blood, ethnicity: African, European, Native American | Homo sapiens (human), taxon:9606, isolate: mHomSap3, paternal haplotype, haploid (principal haplotype of diploid), male, Stem cell, ethnicity: African, European, Native American | Homo sapiens (human), taxon:9606, isolate: PGP1, haploid, male, blood, ethnicity: European North-Eastern | Homo sapiens (human), taxon:9606, isolate: NA19240, haploid (paternal haplotype of diploid), female, blood, b-lymphocyte, ethnicity: Yoruban African | Homo sapiens (human), taxon:9606, isolate: NA19240, haploid (paternal haplotype of diploid), female, blood, b-lymphocyte, ethnicity: Yoruban African | Homo sapiens (human), taxon:9606, isolate: HG01243, haploid (paternal haplotype of diploid), male, blood, b-lymphocyte, ethnicity: Puerto rican | Homo sapiens (human), taxon:9606, isolate: HG01243, haploid (maternal haplotype of diploid), male, blood, b-lymphocyte, ethnicity: Puerto rican | Homo sapiens (human), taxon:9606, isolate: NA24631, haploid (maternal haplotype of diploid), male, b-lymphocyte, ethnicity: Asian | |||
| Genome assembly | GRCh38.p12 | T2T-CHM13v2.0 | GRCh37.p13 | mHomSap3.mat | mHomSap3.pat | PGP1v1 | NA19240.pri.mat.f1_v2 | NA19240.alt.pat.f1_v2 | HG01243.alt.pat.f1_v2 | HG01243.pri.mat.f1_v2 | HG005.pri.mat.f1_v2 | |||
| GenBank assembly ID | GCA_000001405.27 | GCA_009914755.4 | GCA_000001405.14 | GCA_016695395.2 | GCA_016700455.2 | GCA_020497115.1 | GCA_018503275.1 | GCA_018503265.1 | GCA_018504045.1 | GCA_018504375.1 | GCA_018506965.1 | |||
| RefSeq assembly ID | GCF_000001405.38 | GCF_009914755.1 | GCF_000001405.25 | |||||||||||
| BAC library | ||||||||||||||
| Chromosome | 14q32.33 | 14q32.33 | 14q32.33 | 14q32.33 | 14q32.33 | 14q32.33 | ||||||||
| Chromosome sequence ID and locus positions (GenBank assembly) | CM000676.2 (105586437-106879844, complement) | CP068264.2 (99830032-101161492, complement) | CM000676.1 (106040491-107298051, complement) | CM028471.1 (86426198-87686180, complement) | CM028575.1 (88582499-87245814, complement) | CM035672.1 (85704981-87022212, complement) | ||||||||
| Chromosome sequence ID and locus positions (RefSeq assembly) | NC_000014.9 (105586437-106879844, complement) | NC_060938.1 (99830032-101161492, complement) | NC_000014.8 (106040491-107298051, complement) | |||||||||||
| IMGT locus orientation on the chromosome | REV | REV | REV | REV | REV | REV | ||||||||
| Scaffold sequence ID and locus contig positions (GenBank assembly) | JAHEOL010000061.1 (1-1157851) | JAHEOM010000181.1 (347641-1686257, complement) | JAHEOY010000121.1 (15590-615715, complement) IGHV7-81 to (IGHV3-30/IGHD6-19/IGHJ6) and IGHG1 to IGHA1*01 | JAHEOY010000024.1 (12445587-12570332, complement) IGHGP to IGHA2 | JAHEOX010000114.1 (355701-1079194, complement) IGHV(III)-82 to IGHV7-34-1 and IGHG1 to IGHA2 | JAHEOX010000206.1 (2234-608712, complement) IGHV3-30-2*01 to IGHG1 | JAHEPN010000185.1 (2805-835569, complement) IGHV(III)-82 to IGHV1-2 | JAHEPN010000015.1 (1-286031) IGHM to IGHA2 |
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| Scaffold sequence ID and locus positions (RefSeq assembly) | ||||||||||||||
| IMGT/LIGM-DB locus reference sequence (ID) | BK063799 | BK063800 | BK063802 | BK063801 | IMGT000147 | IMGT000128 | IMGT000158 | IMGT000177 | IMGT000173 | IMGT000174 | IMGT000175 | IMGT000176 | IMGT000197 | IMGT000198 |
| IMGT/LIGM-DB locus reference sequence length (bp) | 1293408 | 1331461 | 1249050 | 1259983 | 1336686 | 1317232 | 1157851 | 1338617 | 600126 | 124746 | 723494 | 606479 | 832765 | 286031 |
Human (Homo sapiens) IGHV/OR16 orphon set locus
| Human (Homo sapiens) IGHV/OR16 orphon set locus | IGHV/OR16 orphon set locus |
|---|---|
| IMGT locus ID: Homsap_IGHV/OR16_1 | |
| Taxonomy | Homo sapiens (human), taxon:9606 |
| Genome assembly | GRCh38.p13 |
| GenBank assembly ID | GCA_000001405.28 |
| RefSeq assembly ID | GCF_000001405.39 |
| BAC library | |
| Chromosome | 16p11.2 |
| Chromosome sequence ID and positions (GenBank assembly) | CM000678.2 (31951032-34014686) |
| Chromosome sequence ID and positions (RefSeq assembly) | NC_000016.10 (31951032-34014686) |
| IMGT orientation on the chromosome | FWD |
| IMGT/LIGM-DB reference sequence (ID) | IMGT000069 |
| IMGT/LIGM-DB reference sequence length (bp) | 2063655 |
More information:
See also:
- Created:
- 27/03/2019
- Last updated:
- 13/06/2024
- Authors:
- Ariadni Papadaki, Maria Georga, Joumana Jabado-Michaloud, Géraldine Folch, Morgane Bertignac, Imène Chentli, Gérard Lefranc, Marie-Paule Lefranc, Véronique Giudicelli and Sofia Kossida
