IMGT Repertoire (IG and TR)
Locus gene order: house mouse (Mus musculus) strain NOD/SCID IGH locus
Relative position (order) of a gene, in a locus from the 5' end of a locus to its 3' end.
House mouse (Mus musculus) strain NOD/SCID IGH locus
| IMGT gene name | Functionality | IMGT gene order IMGT locus ID : Musmus_IGH_4 Genome assembly: NOD_SCID Strain: NOD/SCID |
IMGT gene orientation in locus | Copy Number Variation (CNV) | Haplotypes |
|---|---|---|---|---|---|
| IGHV1-86 | P | 1 | direct | ||
| IGHV1-85 | F | 2 | direct | ||
| IGHV1-84 | F | 3 | direct | ||
| IGHV1-83 | P | 4 | direct | ||
| IGHV1-82 | F | 5 | direct | ||
| IGHV8-18 | P | 6 | direct | ||
| IGHV1-81 | F | 7 | direct | ||
| IGHV1-80 | F | 8 | direct | ||
| IGHV1-79 | P | 9 | direct | ||
| IGHV8-17 | P | 10 | direct | ||
| IGHV1-78 | F | 11 | direct | ||
| IGHV1-77 | F | 12 | direct | ||
| IGHV8-16 | P | 13 | direct | ||
| IGHV1-76 | F | 14 | direct | ||
| IGHV8-15 | P | 15 | direct | ||
| IGHV1-75 | F | 16 | direct | ||
| IGHV8-14 | P | 17 | direct | ||
| IGHV1-74 | F | 18 | direct | ||
| IGHV1-73 | P | 19 | direct | ||
| IGHV8-13 | P | 20 | direct | ||
| IGHV1-72 | F | 21 | direct | ||
| IGHV1-71 | F | 22 | direct | ||
| IGHV(I)-2 | P | 23 | direct | ||
| IGHV1-70 | P | 24 | direct | ||
| IGHV8-12 | F | 25 | direct | ||
| IGHV1-69 | F | 26 | direct | ||
| IGHV1-68 | P | 27 | direct | ||
| IGHV1-67 | P | 28 | direct | ||
| IGHV1-66 | F | 29 | direct | ||
| IGHV8-11 | F | 30 | direct | ||
| IGHV1-65 | P | 31 | direct | ||
| IGHV8-10 | P | 32 | direct | ||
| IGHV1-64 | F | 33 | direct | ||
| IGHV1-63 | F | 34 | direct | ||
| IGHV8-9 | ORF | 35 | direct | ||
| IGHV1-62-3 | ORF | 36 | direct | ||
| IGHV1-62-2 | F | 37 | direct | ||
| IGHV(I)-1 | P | 38 | direct | ||
| IGHV8-8-1 | P | 39 | direct | ||
| IGHV1-62-1 | F | 40 | direct | ||
| IGHV1-62 | P | 41 | direct | ||
| IGHV1-61 | F | 42 | direct | ||
| IGHV1-60 | P | 43 | direct | ||
| IGHV1-59 | F | 44 | direct | ||
| IGHV1-58 | F | 45 | direct | ||
| IGHV8-8 | F | 46 | direct | ||
| IGHV1-57 | P | 47 | direct | ||
| IGHV(I)-3 | P | 48 | direct | ||
| IGHV8-7 | P | 49 | direct | ||
| IGHV1-56 | F | 50 | direct | ||
| IGHV1-55 | F | 51 | direct | ||
| IGHV1-54 | F | 52 | direct | ||
| IGHV8-6 | F | 53 | direct | ||
| IGHV1-53 | F | 54 | direct | ||
| IGHV1-52 | F | 55 | direct | ||
| IGHV1-51 | P | 56 | direct | ||
| IGHV1-50 | F | 57 | direct | ||
| IGHV8-5 | F | 58 | direct | ||
| IGHV1-49 | F | 59 | direct | ||
| IGHV1-48 | P | 60 | direct | ||
| IGHV8-4 | ORF | 61 | direct | ||
| IGHV8-3 | P | 62 | direct | ||
| IGHV1-47 | F | 63 | direct | ||
| IGHV1-46 | P | 64 | direct | ||
| IGHV1-45 | P | 65 | direct | ||
| IGHV1-44 | P | 66 | direct | ||
| IGHV1-43 | F | 67 | direct | ||
| IGHV1-42 | F | 68 | direct | ||
| IGHV1-41 | P | 69 | direct | ||
| IGHV1-40 | P | 70 | direct | ||
| IGHV1-39 | F | 71 | direct | ||
| IGHV1-38 | P | 72 | direct | ||
| IGHV1-37 | F | 73 | direct | ||
| IGHV1-36 | F | 74 | direct | ||
| IGHV1-35 | P | 75 | direct | ||
| IGHV1-34 | F | 76 | direct | ||
| IGHV1-33 | P | 77 | direct | ||
| IGHV1-32 | P | 78 | direct | ||
| IGHV1-31 | F | 79 | direct | ||
| IGHV1-30 | P | 80 | direct | ||
| IGHV1-29 | P | 81 | direct | ||
| IGHV1-28 | P | 82 | direct | ||
| IGHV1-27 | P | 83 | direct | ||
| IGHV1-26 | F | 84 | direct | ||
| IGHV1-25 | P | 85 | direct | ||
| IGHV1-24 | ORF | 86 | direct | ||
| IGHV1-23 | ORF | 87 | direct | ||
| IGHV1-22 | F | 88 | direct | ||
| IGHV1-21 | P | 89 | direct | ||
| IGHV1-21-1 | P | 90 | direct | ||
| IGHV1-20 | F | 91 | direct | ||
| IGHV1-19 | F | 92 | direct | ||
| IGHV1-19-1 | P | 93 | direct | ||
| IGHV1-18 | F | 94 | direct | ||
| IGHV1-17 | P | 95 | direct | ||
| IGHV1-17-1 | P | 96 | direct | ||
| IGHV1-16 | ORF | 97 | direct | ||
| IGHV1-15 | F | 98 | direct | ||
| IGHV1-14 | P | 99 | direct | ||
| IGHV1-13 | P | 100 | direct | ||
| IGHV1-12 | F | 101 | direct | ||
| IGHV1-11 | F | 102 | direct | ||
| IGHV1-10 | P | 103 | direct | ||
| IGHV1-9 | F | 104 | direct | ||
| IGHV15-2 | F | 105 | direct | ||
| IGHV1-8 | P | 106 | direct | ||
| IGHV10-4 | P | 107 | direct | ||
| IGHV1-7 | F | 108 | direct | ||
| IGHV1-6 | P | 109 | direct | ||
| IGHV10-3 | F | 110 | direct | ||
| IGHV1-5 | F | 111 | direct | ||
| IGHV10-2 | P | 112 | direct | ||
| IGHV1-4 | F | 113 | direct | ||
| IGHV1-3 | P | 114 | direct | ||
| IGHV10-1 | F | 115 | direct | ||
| IGHV1-2 | P | 116 | direct | ||
| IGHV8-2 | ORF | 117 | direct | ||
| IGHV6-7 | F | 118 | direct | ||
| IGHV6-6 | F | 119 | direct | ||
| IGHV6-5 | ORF | 120 | direct | ||
| IGHV6-4 | ORF | 121 | direct | ||
| IGHV6-3 | F | 122 | direct | ||
| IGHV12-3 | F | 123 | direct | ||
| IGHV13-2 | F | 124 | direct | ||
| IGHV1-1 | P | 125 | direct | ||
| IGHV8-1 | P | 126 | direct | ||
| IGHV3-8 | F | 127 | direct | ||
| IGHV5-21 | P | 128 | direct | ||
| IGHV3-7 | P | 129 | direct | ||
| IGHV9-4 | F | 130 | direct | ||
| IGHV3-6 | F | 131 | direct | ||
| IGHV(III)-13 | P | 132 | direct | ||
| IGHV13-1 | P | 133 | direct | ||
| IGHV3-5 | F | 134 | direct | ||
| IGHV3-4 | F | 135 | direct | ||
| IGHV7-4 | F | 136 | direct | ||
| IGHV3-3 | F | 137 | direct | ||
| IGHV14-4 | F | 138 | direct | ||
| IGHV15-1 | P | 139 | direct | ||
| IGHV7-3 | F | 140 | direct | ||
| IGHV9-3 | F | 141 | direct | ||
| IGHV12-2 | P | 142 | direct | ||
| IGHV9-2 | F | 143 | direct | ||
| IGHV12-1 | P | 144 | direct | ||
| IGHV9-1 | F | 145 | direct | ||
| IGHV6-2 | P | 146 | direct | ||
| IGHV16-1 | ORF | 147 | direct | ||
| IGHV(III)-7 | P | 148 | direct | ||
| IGHV14-3 | F | 149 | direct | ||
| IGHV11-2 | F | 150 | direct | ||
| IGHV(III)-6 | P | 151 | direct | ||
| IGHV3-2 | P | 152 | direct | ||
| IGHV4-2 | P | 153 | direct | ||
| IGHV14-2 | F | 154 | direct | ||
| IGHV11-1 | F | 155 | direct | ||
| IGHV(III)-5 | P | 156 | direct | ||
| IGHV3-1 | F | 157 | direct | ||
| IGHV4-1 | F | 158 | direct | ||
| IGHV14-1 | F | 159 | direct | ||
| IGHV7-2 | ORF | 160 | direct | ||
| IGHV7-1 | F | 161 | direct | ||
| IGHV5-19 | P | 162 | direct | ||
| IGHV2-9 | F | 163 | direct | ||
| IGHV2-8 | P | 164 | direct | ||
| IGHV5-18 | P | 165 | direct | ||
| IGHV5-17 | F | 166 | direct | ||
| IGHV5-16 | F | 167 | direct | ||
| IGHV5-15 | F | 168 | direct | ||
| IGHV2-7 | F | 169 | direct | ||
| IGHV(III)-4 | P | 170 | direct | ||
| IGHV2-6-8 | F | 171 | direct | ||
| IGHV(III)-11 | P | 172 | direct | ||
| IGHV(III)-10 | P | 173 | direct | ||
| IGHV(III)-14 | P | 174 | direct | ||
| IGHV2-9-1 | F | 175 | direct | ||
| IGHV(III)-9 | P | 176 | direct | ||
| IGHV5-12-4 | F | 177 | direct | ||
| IGHV5-7-6 | P | 178 | direct | ||
| IGHV5-9-1 | F | 179 | direct | ||
| IGHV(III)-1 | P | 180 | direct | ||
| IGHV(III)-8 | P | 181 | direct | ||
| IGHV2-6 | F | 182 | direct | ||
| IGHV5-13 | P | 183 | direct | ||
| IGHV5-12 | F | 184 | direct | ||
| IGHV5-11 | P | 185 | direct | ||
| IGHV2-5 | F | 186 | direct | ||
| IGHV(II)-2 | P | 187 | direct | ||
| IGHV5-10 | P | 188 | direct | ||
| IGHV5-9 | F | 189 | direct | ||
| IGHV5-8 | P | 190 | direct | ||
| IGHV2-4 | F | 191 | direct | ||
| IGHV(II)-1 | P | 192 | direct | ||
| IGHV5-7 | P | 193 | direct | ||
| IGHV5-6 | F | 194 | direct | ||
| IGHV5-5 | P | 195 | direct | ||
| IGHV2-3 | F | 196 | direct | ||
| IGHV6-1 | P | 197 | direct | ||
| IGHV5-4 | F | 198 | direct | ||
| IGHV5-3 | P | 199 | direct | ||
| IGHV2-2 | F | 200 | direct | ||
| IGHV5-2 | F | 201 | direct | ||
| IGHV2-1 | P | 202 | direct | ||
| IGHV5-1 | P | 203 | direct | ||
| IGHD1-3 | F | 204 | direct | ||
| IGHD5-1 | P | 205 | direct | ||
| IGHD6-1-1 | ORF | 206 | direct | ||
| IGHD3-1 | F | 207 | direct | ||
| IGHD1-1 | F | 208 | direct | ||
| IGHD5-1-1 | ORF | 209 | direct | ||
| IGHD6-1 | F | 210 | direct | ||
| IGHD2-3 | F | 211 | direct | ||
| IGHD5-7 | ORF | 212 | direct | ||
| IGHD6-2 | F | 213 | direct | ||
| IGHD2-4 | F | 214 | direct | ||
| IGHD5-2 | ORF | 215 | direct | ||
| IGHD6-2-1 | F | 216 | direct | ||
| IGHD2-5 | F | 217 | direct | ||
| IGHD5-3 | ORF | 218 | direct | ||
| IGHD6-3 | F | 219 | direct | ||
| IGHD2-6 | F | 220 | direct | ||
| IGHD5-4 | ORF | 221 | direct | ||
| IGHD6-4 | F | 222 | direct | ||
| IGHD2-7 | F | 223 | direct | ||
| IGHD5-5 | ORF | 224 | direct | ||
| IGHD6-5 | ORF | 225 | direct | ||
| IGHD2-8 | F | 226 | direct | ||
| IGHD5-6 | ORF | 227 | direct | ||
| IGHD3-2 | F | 228 | direct | ||
| IGHD4-1 | F | 229 | direct | ||
| IGHJ1 | F | 230 | direct | ||
| IGHJ2 | F | 231 | direct | ||
| IGHJ3 | F | 232 | direct | ||
| IGHJ4 | F | 233 | direct | ||
| IGHM | F | 234 | direct | ||
| IGHD | F | 235 | direct | ||
| IGHG3 | F | 236 | direct | ||
| IGHG1 | F | 237 | direct | ||
| IGHG2B | F | 238 | direct | ||
| IGHG2C | F | 239 | direct | ||
| IGHE | F | 240 | direct | ||
| IGHA | F | 241 | direct | ||
More information:
- Created:
- 02/12/2024
- Last updated:
- 18/12/2024
- Authors:
- Anna Tran, Ifigeneia Sideri
