IMGT Repertoire (IG and TR)


Locus in genome assembly: human (Homo sapiens) IGH locus on chromosome 14q32.33

Human (Homo sapiens) IGH locus on chromosome 14q32.33

IMGT locusIGH locus
IMGT locus ID: Homosap_IGH_1IMGT locus ID: Homosap_IGH_2IMGT locus ID: Homosap_IGH_3IMGT locus ID: Homosap_IGH_4IMGT locus ID: Homosap_IGH_5IMGT locus ID: Homosap_IGH_6IMGT locus ID: Homosap_IGH_7IMGT locus ID: Homosap_IGH_8IMGT locus ID: Homosap_IGH_9IMGT locus ID: Homosap_IGH_10IMGT locus ID: Homosap_IGH_11IMGT locus ID: Homosap_IGH_12IMGT locus ID: Homosap_IGH_13IMGT locus ID: Homosap_IGH_14
TaxonomyHomo sapiens (human), taxon:9606Homo sapiens (human), taxon:9606, isolate: CHM13, haploid cell line, female, hydatidiform moleHomo sapiens (human), taxon:9606Homo sapiens (human), taxon:9606, isolate: mHomSap3, maternal haplotype, haploid (principal haplotype of diploid), male, blood, ethnicity: African, European, Native American Homo sapiens (human), taxon:9606, isolate: mHomSap3, paternal haplotype, haploid (principal haplotype of diploid), male, Stem cell, ethnicity: African, European, Native AmericanHomo sapiens (human), taxon:9606, isolate: PGP1, haploid, male, blood, ethnicity: European North-EasternHomo sapiens (human), taxon:9606, isolate: NA19240, haploid (paternal haplotype of diploid), female, blood, b-lymphocyte, ethnicity: Yoruban AfricanHomo sapiens (human), taxon:9606, isolate: NA19240, haploid (paternal haplotype of diploid), female, blood, b-lymphocyte, ethnicity: Yoruban AfricanHomo sapiens (human), taxon:9606, isolate: HG01243, haploid (paternal haplotype of diploid), male, blood, b-lymphocyte, ethnicity: Puerto ricanHomo sapiens (human), taxon:9606, isolate: HG01243, haploid (maternal haplotype of diploid), male, blood, b-lymphocyte, ethnicity: Puerto ricanHomo sapiens (human), taxon:9606, isolate: NA24631, haploid (maternal haplotype of diploid), male, b-lymphocyte, ethnicity: AsianHomo sapiens (human), taxon:9606, isolate: NA24631, haploid (paternal haplotype of diploid), male, b-lymphocyte, ethnicity: AsianHomo sapiens (human), taxon:9606, isolate: NA24385, haploid (maternal haplotype of diploid), male, b-lymphocyte, ethnicity: Caucasian (Eastern European Ashkenazic Jewish)Homo sapiens (human), taxon:9606, isolate: NA24385, haploid (paternal haplotype of diploid), male, b-lymphocyte, ethnicity: Caucasian (Eastern European Ashkenazic Jewish)
Genome assemblyGRCh38.p12T2T-CHM13v2.0GRCh37.p13mHomSap3.matmHomSap3.patPGP1v1NA19240.pri.mat.f1_v2NA19240.alt.pat.f1_v2HG01243.alt.pat.f1_v2HG01243.pri.mat.f1_v2HG005.pri.mat.f1_v2HG005.alt.pat.f1_v2Q100 hg002v1.0.1.matQ100 hg002v1.0.1.pat
GenBank assembly IDGCA_000001405.27GCA_009914755.4GCA_000001405.14GCA_016695395.2GCA_016700455.2GCA_020497115.1GCA_018503275.1GCA_018503265.1GCA_018504045.1GCA_018504375.1GCA_018506965.1GCA_018506945.1GCA_018852615.2GCA_018852605.2
RefSeq assembly IDGCF_000001405.38GCF_009914755.1GCF_000001405.25
BAC library
Chromosome14q32.3314q32.3314q32.3314q32.3314q32.3314q32.3314q32.3314q32.33
Chromosome sequence ID and locus positions (GenBank assembly)CM000676.2 (105586437-106879844, complement)CP068264.2 (99830032-101161492, complement)CM000676.1 (106040491-107298051, complement)CM028471.1 (86426198-87686180, complement)CM028575.1 (88582499-87245814, complement)CM035672.1 (85704981-87022212, complement)CP139529.1 (107573738-108656944, complement)CP139552.1 (105284140-105800994, complement)
Chromosome sequence ID and locus positions (RefSeq assembly)NC_000014.9 (105586437-106879844, complement)NC_060938.1 (99830032-101161492, complement)NC_000014.8 (106040491-107298051, complement)
IMGT locus orientation on the chromosomeREVREVREVREVREVREVREVREV
Scaffold sequence ID and locus contig positions (GenBank assembly)JAHEOL010000061.1 (1-1157851)JAHEOM010000181.1 (347641-1686257, complement)JAHEOY010000121.1 (15590-615715, complement)
IGHV7-81 to (IGHV3-30/IGHD6-19/IGHJ6) and IGHG1 to IGHA1*01 		JAHEOY010000024.1 (12445587-12570332, complement)
IGHGP to IGHA2		JAHEOX010000114.1 (355701-1079194, complement)
IGHV(III)-82 to IGHV7-34-1 and IGHG1 to IGHA2		JAHEOX010000206.1 (2234-608712, complement)
IGHV3-30-2*01 to IGHG1		JAHEPN010000185.1 (2805-835569, complement)
IGHV(III)-82 to IGHV1-2		JAHEPN010000015.1 (1-286031)
IGHM to IGHA2		JAHEPO010000226.1 (1..962769)
IGHV(III)-82 to IGHA2
Scaffold sequence ID and locus positions (RefSeq assembly)
IMGT/LIGM-DB locus reference sequence (ID)BK063799BK063800BK063802BK063801IMGT000147IMGT000128IMGT000158IMGT000177IMGT000173IMGT000174IMGT000175IMGT000176IMGT000197IMGT000198IMGT000199IMGT000207IMGT000208
IMGT/LIGM-DB locus reference sequence length (bp)129340813314611249050125998313366861317232115785113386176001261247467234946064798327652860319627691083207516855

Human (Homo sapiens) IGH locus

Human (Homo sapiens) IGHV/OR16 orphon set locus IGHV/OR16 orphon set locus
IMGT locus ID: Homsap_IGHV/OR16_1
Taxonomy Homo sapiens (human), taxon:9606
Genome assembly GRCh38.p13
GenBank assembly ID GCA_000001405.28
RefSeq assembly ID GCF_000001405.39
BAC library
Chromosome 16p11.2
Chromosome sequence ID and positions (GenBank assembly) CM000678.2 (31951032-34014686)
Chromosome sequence ID and positions (RefSeq assembly) NC_000016.10 (31951032-34014686)
IMGT orientation on the chromosome FWD
IMGT/LIGM-DB reference sequence (ID) IMGT000069
IMGT/LIGM-DB reference sequence length (bp) 2063655
Created:
04/11/2020
Last updated:
11/09/2024
Authors:
Ariadni Papadaki, Maria Georga, Joumana Jabado-Michaloud, Géraldine Folch, Morgane Bertignac, Gérard Lefranc, Marie-Paule Lefranc, Véronique Giudicelli and Sofia Kossida