IMGT Repertoire (IG and TR)

Locus in genome assembly: Naked mole-rat (Heterocephalus glaber) TRG locus

Naked mole-rat (Heterocephalus glaber) TRG locus

IMGT locus TRG locus TRG locus TRG locus TRG locus
IMGT locus ID: Hetgla_TRG_1_contig_only IMGT locus ID: Hetgla_TRG_2_scaffold_only IMGT locus ID: Hetgla_TRG_3 IMGT locus ID: Hetgla_TRG_4
Taxonomy Heterocephalus glaber (naked mole-rat), taxon:10181, isolate: MEF-2018, pooled male and female Heterocephalus glaber (naked mole-rat), taxon:10181, isolate: NMR 29, female Heterocephalus glaber (naked mole-rat), taxon:10181, male Heterocephalus glaber (naked mole-rat), taxon:10181, male
Genome assembly Heter_glaber.v1.7_hic_pac HetGla_female_1.0 Naked mole-rat paternal Naked mole-rat maternal
GenBank assembly ID GCA_014060925.1 GCA_000247695.1 GCA_944319725.1 GCA_944319715.1
RefSeq assembly ID GCF_000247695.1
Chromosome 1 1
Chromosome sequence ID and locus positions (GenBank assembly) OX090941.1
15517478-5857890
OX090909.1
44357246-44690455
Chromosome sequence ID and locus positions (RefSeq assembly)
IMGT locus orientation on the chromosome forward (FWD) forward (FWD)
IMGT/LIGM-DB locus reference sequence (ID) BK064755 BK064756
IMGT/LIGM-DB locus reference sequence length (bp) 340413 333210
Scaffold IMGT000072 IMGT000083
Scaffold ID RPGA01000026.1 NW_004624740
Scaffold length 337036 400455
Scaffold sequence ID and locus contig positions (GenBank assembly) RPGA01000026.1
(10831321-11168357)
NW_004624740
(22668860-23069314)
IMGT notes:
  1. (1) In IMGT000083, only new genes and new alleles compared to IMGT000072 are annotated.
Created:
04/10/2021
Last updated:
24/01/2024
Authors:
Maria Georga, Ariadni Papadaki, Alexander Albani