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IGK locus 5' and 3' bornes

5' borne: Not defined (N.d.), PAX8 (paired box 8) Most 5' gene in the IGK locus IGK locus Most 3' gene in the IGK locus 3' borne: RPIA (ribose 5-phosphate isomerase A)
Gene name NCBI ID Positions on chromosome IMGT gene name (Fct) NCBI ID Positions on chromosome Species Locus representation Locus orientation Chr NC ID IMGT gene name (Fct) NCBI ID Positions on chromosome Gene name NCBI ID Positions on chromosome
N.d. IGKV3D-7 (F) 28877 90234837..90235368 Homo sapiens REV 2 (2p11.2) NC_000002.12 IGKC (F) 3514 88857361..88857683, complement RPIA 22934 88691658..88750935
N.d. IGKV2-137 (F, P) 692187 67555636..67556216 Mus musculus FWD 6 (6C1) NC_000072.6 IGKC (F) 16071 70726435..70726754 RPIA 19895 70765720..70792175, complement
PAX8 534661 46916023..46981272, complement IGKV1-25 (P) 47111704..47112198 Bos taurus FWD 11 NC_037338.1 IGKC (F) 47305285..47305610 RPIA 613376 47351588..47386164, complement
PAX8 105104189 9074327..9129758, complement IGKV2-30 (P) 9221685..9222455 Camelus dromedarius FWD 28 NC_044538.1 IGKC (F) 9358462..9358802 RPIA 105104197 9390509..9417362, complement
PAX8 (1) 403927 37012886..37037488, complement IGKV9-24 (P) 37180238..37181172 Canis lupus familiaris FWD 17 CM016447.1 IGKC (F) 37477354..37477685 RPIA (1) 100856455 37509243..37539810, complement
N.d IGKV1-21 (P) 46771459..46771959 Capra hircus FWD 11 NC_030818.1 IGKC (F) 46914953..46915271 RPIA 102185282 46956337..46991498, complement
PAX8 101096468 104730428..104790170 IGKV9-18 (ORF) 104615574..104616492, complement Felis catus REV A3 NC_018725.3 IGKC (F) 104466811..104467142, complement RPIA 101096225 104403838..104435405
N.d IGKV1-21 (ORF) 59288637..59289222, complement Ovis aries REV 3 NC_019460.2 IGKC (F) 59160071..59160393, complement RPIA 101110313 59083074..59118556
PAX8 100065303 16779740..16838802, complement IGKV3-56 (P) 16969619..16969905 Equus caballus FWD 15 NC_009158.3 IGKC (F) 17799031..17799353 RPIA 100052643 17833081..17855532, complement
PAX8 701906 16398231..16459040, complement IGKV2-105 (P) 16794165..16794918, complement Macaca mulatta FWD 13 NC_041766.1 IGKC (F) 18130540..18130862 RPIA 699694 18225089..18279248, complement
PAX8 123637163 68334643..68393786 IGKV9-17 (F) 68224857..68225744, complement Ring-tailed lemur REV 4 NC_059131.1 IGKC (F) 68105144..68105466, complement RPIA 123637157 68029092..68071025
PAX8 101137174 105245871..105306466 IGKV1-49 (F) 105120359..105120863, complement Gorilla gorilla gorilla REV 2A NC_044603.1 IGKC (F) 104247813..104248135, complement RPIA 101148377 104064034..104126396
PAX8 100189903 19346300..19384831, complement IGKV9-71 (P) 19658706..19658962, complement Pongo abelii FWD 2A NC_036904.1 IGKC (F) 20465956...20466275 RPIA 100447020 20602495..20661077
PAX8 129030568 41551049..41613914, complement IGKV1-69-1 (F) 41874170...41874456, complement Pongo pygmaeus FWD 2A NC_072374.1 IGKC (F) 42651206...42651525 RPIA 129025031 42783482..42842075
PAX8 101675555 16153544..16210959 IGKV1-87 (F) 16022694..16023169, complement Mustela putorius furo REV Unknown (2) NW_025421343 IGKC (F) 15326494..15326828, complement RPIA 101690037 15267707..15305438

IMGT notes:
  1. (1) PAX8 and RPIA are not described in reference assembly (Basenji_breed-1.1). They were found by comparison with those annotated in assembly CanFam3.1.
  2. (2) The assembly could not allow us to identify the chromosome containing the locus.

More information:
Locus bornes: IGH locus 5' and 3' bornes
Locus bornes: IGL locus 5' and 3' bornes
Locus bornes: TRA/TRD locus 5' and 3' bornes
Locus bornes: TRB locus 5' and 3' bornes
Locus bornes: TRG locus 5' and 3' bornes