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Naked mole-rat (Heterocephalus glaber) TRB locus

IMGT gene name Functionality IMGT locus gene order
IMGT locus ID:Hetgla_TRB_3
Genome assembly:Naked mole-rat maternal		 IMGT gene order
IMGT locus ID: Hetgla_TRB_4
Genome assembly: Naked mole-rat maternal		 IMGT gene orientation in locus Copy Number Variation (CNV)
TRBV4 F 1 1 direct
TRBV2 ORF 2 2 direct
TRBV5 P 3 3 direct
TRBV9 F P 4 4 direct
TRBV6 ORF 5 5 direct
TRBV7 F 6 6 direct
TRBV8 ORF 7 7 direct
TRBVA P 8 8 direct
TRBV13 P 9 9 direct
TRBV10 ORF 10 10 direct
TRBV12-1 F 11 11 direct
TRBV12-2 ORF 12 12 direct
TRBV15 P 13 13 direct
TRBV16 P 14 14 direct
TRBV18-1 F 15 15 direct
TRBV19-1 ORF 16 16 direct
TRBV20-1 ORF 17 17 direct
TRBV20-2 ORF 18 18 direct
TRBV21 P 19 19 direct
TRBV22 P 20 20 direct
TRBV23-1 F 21 21 direct
TRBV23-2 F 22 22 direct
TRBV24-2 P 23 23 direct
TRBV25 P 24 24 direct
TRBV26 F 25 25 direct
TRBV27 P 26 26 direct
TRBV28 P 27 27 direct
TRBV29 P 28 28 direct
PRSS2 F 29 29 direct
TRBD1 F 30 30 direct
TRBJ1-1 ORF 31 31 direct
TRBJ1-2 F 32 32 direct
TRBJ1-3 F 33 33 direct
TRBJ1-4 ORF 34 34 direct
TRBJ1-5 ORF 35 35 direct
TRBJ1-6 F 36 36 direct
TRBC1 F 37 37 direct
TRBD2 F 38 38 direct
TRBJ2-1 ORF 39 39 direct
TRBJ2-2 F 40 40 direct
TRBJ2-3 ORF 41 41 direct
TRBJ2-4 F 42 42 direct
TRBJ2-5 F 43 43 direct
TRBJ2-6 F 44 44 direct
TRBJ2-7 ORF 45 45 direct
TRBC2 F 46 46 direct
TRBV30 F 47 47 opposite
EPHB6 F 48 48 direct
IMGT notes:
  1. (1) TRBV19-2, TRBV18-2 and TRBV24-1 genes are not present here, as they are only found in the scaffold assembly (IMGT000070).
Created:
19/05/2021
Last updated:
24/01/2024
Authors:
Ariadni Papadaki, Maria Georga