IMGT locus | TRB locus | TRB locus | |||||
---|---|---|---|---|---|---|---|
IMGT locus ID: Hetgla_TRB_1_scaffolds_only | IMGT locus ID: Hetgla_TRB_2_scaffolds_only | ||||||
Taxonomy | Heterocephalus glaber (Naked mole-rat), taxon:10181, Isolate: MEF-2018 (pooled male and female) | Heterocephalus glaber (Naked mole-rat), taxon:10181, Isolate: NMR 29 (female) | |||||
Genome assembly | Heter_glaber.v1.7_hic_pac | HetGla_female_1.0 | |||||
GenBank assembly ID | GCA_014060925.1 | GCA_000247695.1 | |||||
RefSeq assembly ID | nd | GCF_000247695.1 | |||||
Scaffolds | IMGT000070 (TRBV4 to TRBV30) | IMGT000090 (TRBV1S1) | IMGT000091 (TRBV1S1) | IMGT000079 (TRBV4 to TRBV19) (1) | IMGT000080 (TRBV20 to TRBV30) (1) | IMGT000087 (TRBV1S1) | IMGT000088 (TRBV1S1) |
Scaffold ID | RPGA01000024.1 | RPGA01000030.1 | RPGA01000018.1 | JH602132.1 | JH602113.1 | JH602078.1 | JH602134.1 |
Scaffold length | 358673 | 20662 | 20632 | 112272 | 177068 | 20662 | 20632 |
Scaffold sequence ID and locus contig positions (GenBank assembly) | RPGA01000024.1 (13161839-13520511, complement) | RPGA01000030.1 (45399595-45420256) | RPGA01000018.1 (66027126-66047757) | JH602132.1 (34504-146776, complement) | JH602113.1 (12234339-12411407, complement) | JH602078.1 (22258888-22279229) | JH602134.1 (9597542-9617848) |
Chromosome | nd | nd | nd | nd | nd | nd | nd |
Chromosome sequence ID and locus positions (GenBank assembly) | nd | nd | nd | nd | nd | nd | nd |
Chromosome sequence ID and locus positions (RefSeq assembly) | nd | nd | nd | nd | nd | nd | nd |
IMGT locus orientation on the chromosome | nd | nd | nd | nd | nd | nd | nd |
IMGT/LIGM-DB locus reference sequence (ID) | nd | nd | nd | nd | nd | nd | nd |
IMGT/LIGM-DB locus reference sequence length (bp) | nd | nd | nd | nd | nd | nd | nd Provisional nomenclature (scaffolds only, no chromosome assembly). |