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Naked mole-rat (Heterocephalus glaber) TRB locus

IMGT locusTRB locusTRB locus
IMGT locus ID: Hetgla_TRB_1_scaffolds_onlyIMGT locus ID: Hetgla_TRB_2_scaffolds_only
TaxonomyHeterocephalus glaber (Naked mole-rat), taxon:10181, Isolate: MEF-2018 (pooled male and female)Heterocephalus glaber (Naked mole-rat), taxon:10181, Isolate: NMR 29 (female)
Genome assemblyHeter_glaber.v1.7_hic_pacHetGla_female_1.0
GenBank assembly IDGCA_014060925.1GCA_000247695.1
RefSeq assembly IDndGCF_000247695.1
Scaffolds IMGT000070 (TRBV4 to TRBV30) IMGT000090 (TRBV1S1) IMGT000091 (TRBV1S1) IMGT000079 (TRBV4 to TRBV19) (1) IMGT000080 (TRBV20 to TRBV30) (1) IMGT000087 (TRBV1S1) IMGT000088 (TRBV1S1)
Scaffold ID RPGA01000024.1 RPGA01000030.1 RPGA01000018.1 JH602132.1 JH602113.1 JH602078.1 JH602134.1
Scaffold length 358673 20662 20632 112272 177068 20662 20632
Scaffold sequence ID and locus contig positions (GenBank assembly) RPGA01000024.1 (13161839-13520511, complement) RPGA01000030.1 (45399595-45420256) RPGA01000018.1 (66027126-66047757) JH602132.1 (34504-146776, complement) JH602113.1 (12234339-12411407, complement) JH602078.1 (22258888-22279229) JH602134.1 (9597542-9617848)
Chromosome nd nd nd nd nd nd nd
Chromosome sequence ID and locus positions (GenBank assembly) nd nd nd nd nd nd nd
Chromosome sequence ID and locus positions (RefSeq assembly) nd nd nd nd nd nd nd
IMGT locus orientation on the chromosome nd nd nd nd nd nd nd
IMGT/LIGM-DB locus reference sequence (ID) nd nd nd nd nd nd nd
IMGT/LIGM-DB locus reference sequence length (bp) nd nd nd nd nd nd nd

Provisional nomenclature (scaffolds only, no chromosome assembly).

IMGT notes:
  1. (1) In IMGT000079 and IMGT000080, only new genes and new alleles compared to IMGT000070 are annotated.
Created:
19/05/2021
Last updated:
22/09/2021
Authors:
Maria Georga