IMGT Repertoire (IG and TR)
Locus in genome assembly: Naked mole-rat (Heterocephalus glaber) TRB locus
Naked mole-rat (Heterocephalus glaber) TRB locus
| IMGT locus | TRB locus | TRB locus | TRB locus | TRB locus | |||||
|---|---|---|---|---|---|---|---|---|---|
| IMGT locus ID: Hetgla_TRB_1_scaffolds_only | IMGT locus ID: Hetgla_TRB_2_scaffolds_only | IMGT locus ID: Hetgla_TRB_3 | IMGT locus ID: Hetgla_TRB_4 | ||||||
| Taxonomy | Heterocephalus glaber (Naked mole-rat), taxon:10181, Isolate: MEF-2018 (pooled male and female) | Heterocephalus glaber (Naked mole-rat), taxon:10181, Isolate: NMR 29 (female) | Heterocephalus glaber (Naked mole-rat), taxon:10181 (male) | Heterocephalus glaber (Naked mole-rat), taxon:10181 (male) | |||||
| Genome assembly | Heter_glaber.v1.7_hic_pac | HetGla_female_1.0 | Naked mole-rat paternal | Naked mole-rat maternal | |||||
| GenBank assembly ID | GCA_014060925.1 | GCA_000247695.1 | GCA_944319725.1 | GCA_944319715.1 | |||||
| RefSeq assembly ID | GCF_000247695.1 | ||||||||
| Chromosome | 22 | 22 | |||||||
| Chromosome sequence ID and locus positions (GenBank assembly) | OX090962.1 (49892938-50175826, complement) | OX090930.1 (46639215-46922106, complement) | |||||||
| Chromosome sequence ID and locus positions (RefSeq assembly) | |||||||||
| IMGT locus orientation on the chromosome | reverse (REV) | reverse (REV) | |||||||
| IMGT/LIGM-DB locus reference sequence (ID) | BK064758 | BK064759 | |||||||
| IMGT/LIGM-DB locus reference sequence length (bp) | 282889 | 282892 | |||||||
| Scaffolds | IMGT000070 (TRBV4 to TRBV30) | IMGT000090 (TRBV1S1) | IMGT000091 (TRBV1S1) | IMGT000079 (TRBV4 to TRBV19) (1) | IMGT000080 (TRBV20 to TRBV30) (1) | IMGT000087 (TRBV1S1) | IMGT000088 (TRBV1S1) | ||
| Scaffold ID | RPGA01000024.1 | RPGA01000030.1 | RPGA01000018.1 | JH602132.1 | JH602113.1 | JH602078.1 | JH602134.1 | ||
| Scaffold length | 358673 | 20662 | 20632 | 112272 | 177068 | 20662 | 20632 | ||
| Scaffold sequence ID and locus contig positions (GenBank assembly) | RPGA01000024.1 (13161839-13520511, complement) | RPGA01000030.1 (45399595-45420256) | RPGA01000018.1 (66027126-66047757) | JH602132.1 (34504-146776, complement) | JH602113.1 (12234339-12411407, complement) | JH602078.1 (22258888-22279229) | JH602134.1 (9597542-9617848) | ||
IMGT notes:
- (1) In IMGT000079 and IMGT000080, only new genes and new alleles compared to IMGT000070 are annotated.
More information:
- Gene table: Naked mole-rat (Heterocephalus glaber) TRBV
- Gene table: Naked mole-rat (Heterocephalus glaber) TRBD
- Gene table: Naked mole-rat (Heterocephalus glaber) TRBJ
- Gene table: Naked mole-rat (Heterocephalus glaber) TRBC
- Potential germline repertoire: Naked mole-rat (Heterocephalus glaber) TRBV, TRBD and TRBJ genes
See also:
- Created:
- 19/05/2021
- Last updated:
- 24/01/2024
- Authors:
- Ariadni Papadaki, Maria Georga
