IMGT Repertoire (IG and TR)


Locus in genome assembly: mouse (Mus musculus) IGH locus

Mouse (Mus musculus) IGH locus

IMGT locus IGH locus IGH locus IGH locus IGH locus
IMGT locus ID: Musmus_IGH_1 IMGT locus ID: Musmus_IGH_2 IMGT locus ID: Musmus_IGH_3 IMGT locus ID: Musmus_IGH_4
Taxonomy Mus musculus (house mouse), taxon:10090 Mus musculus (house mouse), taxon:10090 Mus musculus (house mouse), taxon:10090 Mus musculus (house mouse), taxon:10090
Strain:C57BL/6J Strain:BALB/cJ Strain: DBA/2J Strain:NOD/SCID
Genome assembly GRCm38.p6 BALB_cJ_v2 DBA_2J_v2 NOD_SCID
GenBank assembly ID GCA_000001635.8 (replaced) GCA_921997145.1(replaced) GCA_921998315.1 (replaced) GCA_031763685.1
RefSeq assembly ID GCF_000001635.26 (replaced)
BAC library
Chromosome 12 12 12 12
Chromosome sequence ID and locus positions (GenBank assembly) CM001005.2 (113248771-116019951, complement) CAKLHK010000004.1 (106762172-110856714, complement) CAKLHQ010000004.1 (108219737-111688983, complement) CM062733.1 (4038678-6814211)
Chromosome sequence ID and locus positions (RefSeq assembly) NC_000078.6 (113248771-116019951, complement)
IMGT locus orientation on the chromosome REV REV REV FWD
IMGT/LIGM-DB locus reference sequence (ID) IMGT000065 IMGT000115 IMGT000116 IMGT000188
IMGT/LIGM-DB locus reference sequence length (bp) 2771181 4094543 3469247 2775534
Created:
23/11/2020
Last updated:
13/11/2024
Authors:
Anna Tran, Ifigeneia Sideri