IMGT Repertoire (IG and TR)


Locus in genome assembly: Naked mole-rat (Heterocephalus glaber) TRA/TRD locus

Naked mole-rat (Heterocephalus glaber) TRA/TRD locus

IMGT locus TRA/TRD locus TRA/TRD locus TRA/TRD locus
IMGT locus ID: Hetgla_TRA/TRD_1 IMGT locus ID: Hetgla_TRA/TRD_2 IMGT locus ID: Hetgla_TRA/TRD_3
Taxonomy Heterocephalus glaber (Naked mole-rat), taxon:10181, Isolate: MEF-2018 (pooled male and female) Heterocephalus glaber (Naked mole-rat), taxon:10181, Isolate: NMR 29 (female) Heterocephalus glaber (naked mole-rat), taxon:10181, male
Genome assembly Heter_glaber.v1.7_hic_pac HetGla_female_1.0 Naked mole-rat maternal
GenBank assembly ID GCA_014060925.1 GCA_000247695.1 GCA_944319725.1
RefSeq assembly ID GCF_000247695.1
Chromosome 2
Chromosome sequence ID and locus positions (GenBank assembly) OX090910.1 13539188-14906847, complement
Chromosome sequence ID and locus positions (RefSeq assembly)
IMGT locus orientation on the chromosome reverse (REV)
IMGT/LIGM-DB locus reference sequence (ID) BK064754
IMGT/LIGM-DB locus reference sequence length (bp) 1367660
Scaffolds IMGT000071 (TRAV1 to TRAC) IMGT000081 (1)
Scaffold ID RPGA01000003.1 JH602138.1
Scaffold length 1900000 1531666
Scaffold sequence ID and locus contig positions (GenBank assembly) RPGA01000003.1(129500000-131400000, complement) JH602138.1 (7568885-9100551)
Scaffold sequence ID and locus positions (RefSeq assembly) NW_004624825.1 (7568885-9100551)
IMGT notes:
  1. (1) In IMGT000081 only new genes and new alleles compared to IMGT000071 are annotated.
Created:
09/07/2021
Last updated:
24/01/2024
Authors:
Ariadni Papadaki, Maria Georga