IMGT MHC entry from gene to protein for Oncorhynchus mykiss MH1-A

IMGT gene name and definition

Chromosomal localization

Gene exon/intron organization

MH1-A Gene exon/intron organization
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Corresponding protein database accession numbers

Allele names IMGT/LIGM-DB UniProt Protein isoform
Accession numbers Sequence lengths (nt) Accession numbers Sequence lengths (AA)
Oncmyk MH1-A*01 AB162342 1080 Q5FBU4 360 A
AF296362 1048 Q9GJL4 349
Oncmyk MH1-A*02 AF091785 1056 Q9TNN4 352 B
AF115520 437 Q9TNX0 145
AF115521 1056 Q9TNN4 352
Oncmyk MH1-A*02 or *07 AY040637 169 Q95HB0 56
Oncmyk MH1-A*03 AF287483 1053 Q9TNN8 351 B
AF287484 Q9TNN8 351
AF115518 Q9TNN8 351
DQ091771 1045 Q2QF26 348
Oncmyk MH1-A*04 AF287485 1050 Q9GJC2 350 B
AF296367 1048 Q9GJK9 349
Oncmyk MH1-A*05 AF287486 1056 Q9GJC1 352 B
AF296370 1054 Q9GJK6 351
AY040636 169 Q95HB1 56
Oncmyk MH1-A*06 AF287487 1032 Q9GJC0 344 B
Oncmyk MH1-A*07 AF287488 1071 Q9GIJ3 357 C
AF287490 Q9GIJ3 357
AF296372 1069 Q9GJK4 356
Oncmyk MH1-A*07 or *08 or *22 AF104528 218 Q9XR62 72
Oncmyk MH1-A*08 AF287489 1071 Q9GJB9 357 C
Oncmyk MH1-A*09 AF287491 1086 Q9GJB8 362 A
Oncmyk MH1-A*10 AF287492 1089 Q31499 363 A
U55380 Q31499 363
AF296360 1087 Q9GJL6 362
Oncmyk MH1-A*11 AY278456 1065 Q7YP05 355 A
Oncmyk MH1-A*12 AY278449 1050 Q7YP12 350 B
Oncmyk MH1-A*13 AY278451 1044 Q7YP10 348 B
Oncmyk MH1-A*14 AY278452 1071 Q7YP09 357 C
Oncmyk MH1-A*15 AY278454 1077 Q7YP07 359 A
Oncmyk MH1-A*16 AY278455 1071 Q7YP06 357 C
FR688120 E0WMZ4 357
FR688122 E0WMZ6 357
Oncmyk MH1-A*17 DQ091772 1048 Q2QF25 349 B
Oncmyk MH1-A*18 DQ091776 1042 Q2QF21 347 B
Oncmyk MH1-A*19 AF104524 222 Q9XR58 74
Oncmyk MH1-A*20 AF104529 214 Q9XR63 71
Oncmyk MH1-A*21 AF296359 1028 Q9GJL7 342 A
FR688125 1062 E0WMZ9 354
Oncmyk MH1-A*22 AF296363 1081 Q9GJL3 360 A
FR688124 1083 E0WMZ8 361
FR688126 E0WN00 361
Oncmyk MH1-A*23 AF296364 1018 Q9GJL2 339 B
Oncmyk MH1-A*24 AF296365 1024 Q9GJL1 341 E
Oncmyk MH1-A*25 AF296366 1015 Q9GJL0 338 B
Oncmyk MH1-A*26 AF296368 1054 Q9GJK8 351 B
Oncmyk MH1-A*27 AF296369 1054 Q9GJK7 351 B
Oncmyk MH1-A*28 AF296371 1048 Q9GJK5 349 B
AF318187 1019 Q9BDB3 339
Oncmyk MH1-A*29 AF296373 1045 Q9GJK3 348 C
Oncmyk MH1-A*30 AY040638 172 Q95HA9 57
Oncmyk MH1-A*31 AF104579 161 Q9XRB3 53
Oncmyk MH1-A*32 AF104580 165 Q9XRB4 55
Oncmyk MH1-A*33 AF104581 156 Q9XRB5 52
Oncmyk MH1-A*34 AF104582 230 Q9XRB6 76
Oncmyk MH1-A*35 AF318188 1055 Q9BDB2 351 D
Oncmyk MH1-A*36 AF318189 1055 Q9BDB1 351 D
Oncmyk MH1-A*37 AF318190 1040 Q9BDB0 346 C
Oncmyk MH1-A*38 AY278450 1052 Q7YP11 350 A
Oncmyk MH1-A*39 AY278453 1011 Q7YP08 321 B
Oncmyk MH1-A*40 AB012063 1053 Q9TNN8 351 B
Oncmyk MH1-A*41 AF115519 1056 Q9TNN4 352 B
Oncmyk MH1-A*42 AJ007847 1062 Q9MX28 354
Oncmyk MH1-A*43 AB012064 1086 Q9TNX1 362
Oncmyk MH1-A*44 AF115525 699 Q9TNW6 233
Oncmyk MH1-A*45 AF002178 681 O19489 227
Oncmyk MH1-A*46 AF115523 705 Q9TNW8 235
Oncmyk MH1-A*47 AF115524 705 Q9TNW7 235
Oncmyk MH1-A*48 AF115526 684 Q9TNW5 228
Oncmyk MH1-A*49 AF115527 702 Q9TNW4 234
Oncmyk MH1-A*50 AF115528 699 Q9TNW3 233
Oncmyk MH1-A*51 FR688119 1080 E0WMZ3 360
Oncmyk MH1-A*52 FR688123 1062 E0WMZ7 354
Oncmyk MH1-A*53 FR688127 1056 E0WN01 352
Oncmyk MH1-A*54 FR688121 1053 E0WMZ5 351
FR688128 E0WN02 351
Oncmyk MH1-A*55 AY040635 169 Q95HB2 56
Oncmyk MH1-A*56 AF104525 222 Q9XR59 74
Oncmyk MH1-A*57 AF115522 1032 Q9TNW9 344
Oncmyk MH1-A*58 AF296361 1084 Q9GJL5 361

Genomic sequence

Coding region sequence

The coding region (CODING-REGION) sequence starts from INIT-CODON (or its encoded amino acid) to STOP-CODON (not included).
The nucleotide sequence is extracted from cDNA (c) sequences and/or is built by artificial exon joining from genomic DNA (g) sequences. The amino acid sequence is the translation of the nucleotide sequence.

Oncmyk MH1-A*01: AB162342(g)

Coding region structure

coding region structure fish MH1-A

Nucleotide sequence

1        atgaaaggtt ttatcttgct gttgctggga ataggccttc tccatactgc atctgctgct

61       acgcattcac tgcgttatgt gtacactgca acttccggag taccagactt cccagagttt

121      gtcagtctgg gtattgtgga tggaatgcag atagattact atgacagtaa caccaagaga

181      gtagtaccca agcaggactg gatggccaag actgaggggt ctgactactg ggagagacag

241      actcagaact ccattggtga cgagcagacc ttcaaagcca acattgatgt tgccaagcag

301      cgcttcaatc agactggagg agttcacaca ttccagctga tgtatggctg tgagctgggt

361      gatgacggca tcactcgagg agactttcag cttggttatg atggagcaga tttcctcagc

421      ctggacaaga gcactctcac ctggactgct gccaaccaga aagctgtcat caccaagctt

481      aagtgggatg ctaccggagc tgaggctaac tttcagaaga attatctaga aaacacatgc

541      attgagtggc ttaagaagta tgtcaactac ggcaaagaca ctttggaaag gaaagtccgt

601      ccctcagtgt ctctgctcca gaagaccccc tcctctccag tgacctgcca cgcgacaggt

661      ttctacccca gtggagtcat ggtgttctgg cagaaagacg gacaagaaca gcatggagat

721      gtggagcatg gagagatcct ccagaacgat gacggaacct tccagaaaag cacccacctg

781      acagtgacgc ctgaggagtg gaagaacaac aagtatcagt gtgtggttca actcgcgggt

841      atcgaggatg acatcaccaa ggttctgatt gagtctgaga tccagaccaa ctttggaaag

901      accaacaggg gttcaaatga cccaatcact attggcctca tcattggagg ggtgatagct

961      ctcctggtca tcattgttgt tggggtcgtc atttggaaga agaaaaacaa gaaaggcttt

1021     gttccggcca gcacttccga cacggactct gaaaactctg ggaaaggtat ccagaagatt

1081     tga
Nucleotide sequence in FASTA format (without gaps) Oncmyk MH1-A*01

Amino acid sequence

1        MKGFILLLLG IGLLHTASAA THSLRYVYTA TSGVPDFPEF VSLGIVDGMQ IDYYDSNTKR

61       VVPKQDWMAK TEGSDYWERQ TQNSIGDEQT FKANIDVAKQ RFNQTGGVHT FQLMYGCELG

121      DDGITRGDFQ LGYDGADFLS LDKSTLTWTA ANQKAVITKL KWDATGAEAN FQKNYLENTC

181      IEWLKKYVNY GKDTLERKVR PSVSLLQKTP SSPVTCHATG FYPSGVMVFW QKDGQEQHGD

241      VEHGEILQND DGTFQKSTHL TVTPEEWKNN KYQCVVQLAG IEDDITKVLI ESEIQTNFGK

301      TNRGSNDPIT IGLIIGGVIA LLVIIVVGVV IWKKKNKKGF VPASTSDTDS ENSGKGIQKI

361      *
Amino acid sequence in FASTA format (without gap) Oncmyk MH1-A*01

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