IMGT Repertoire (MH)

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IMGT MHC entry from gene to protein for Oncorhynchus mykiss MH2-DB2

IMGT gene name and definition

IMGT gene name: Oncorhynchus mykiss MH2-DB2
IMGT gene definition: major histocompatibility 2 beta 2

Chromosomal localization

Locus name: Oncorhynchus mykiss MHC
Chromosome: 17
Chromosomal localization: 17p

Gene exon/intron organization

Corresponding protein database accession numbers

Allele names	IMGT/LIGM-DB		UniProt
Allele names	Accession numbers	Sequence lengths (nt)	Accession numbers	Sequence lengths (AA)
Oncmyk MH2-DB2*01	AF115529	738	Q9TNW0	246
Oncmyk MH2-DB2*01	FR688149	738	Q9TNW2	246
Oncmyk MH2-DB2*02	AF115531	640	Q9TNW2	213

Genomic sequence

Coding region sequence

The coding region (CODING-REGION) sequence starts from INIT-CODON (or its encoded amino acid) to STOP-CODON (not included).
The nucleotide sequence is extracted from cDNA (c) sequences and/or is built by artificial exon joining from genomic DNA (g) sequences. The amino acid sequence is the translation of the nucleotide sequence.

Oncmyk MH2-DB2*01: AF115529(c)

Coding region structure

Nucleotide sequence

1        atgtctaagt caattcgctt ctacatttgc ctagccgtgg cattatccac tctgtatgaa

61       acagatggat atgcctccga tgtggtgact cgatgtttat acagctctat tgatatgcat

121      ggtgcagagt tcatacagtc ttataccttt aataaggttg aacatctcag attcaacagc

181      actgtgggtg agtttgttgg atacactgag ctgggtctga agaatgcaaa gagattgaac

241      cgtggtcaag aggtggttca aatgcgagga gagctggagc gtctatgtaa gcctaacgct

301      gatatccact acagagccat actggacaag acagttgagc cccatgtcag actgagctca

361      gtgactcccc ccagtggcag acaccctgcc atgctgatgt gcagcgccta tgacttctac

421      cccaaaccaa tcagagtgac ctggctgagg gacggacgtg aggtgaaatc tgatgtgacc

481      tccactgagg agctggctaa cggggactgg tactaccaga tccactccca cctggagtac

541      acacccaagt ctggagagaa gatctcctgc atggtggagc acatcagcct cactgagccc

601      atgatgtatc actgggaccc gtccctgcct gaggctgaga ggaataagat agcgatcggg

661      gcatctggtc tggtgctggg aaccatctta gcattagcag gactgatcta ctacaagaag

721      aagtcttctg gggtgctcta g

Nucleotide sequence in FASTA format (without gaps) Oncmyk MH2-DB2*01

Amino acid sequence

1        MSKSIRFYIC LAVALSTLYE TDGYASDVVT RCLYSSIDMH GAEFIQSYTF NKVEHLRFNS

61       TVGEFVGYTE LGLKNAKRLN RGQEVVQMRG ELERLCKPNA DIHYRAILDK TVEPHVRLSS

121      VTPPSGRHPA MLMCSAYDFY PKPIRVTWLR DGREVKSDVT STEELANGDW YYQIHSHLEY

181      TPKSGEKISC MVEHISLTEP MMYHWDPSLP EAERNKIAIG ASGLVLGTIL ALAGLIYYKK

241      KSSGVL*

Amino acid sequence in FASTA format (without gap) Oncmyk MH2-DB2*01

Legend:

Colors are according to IMGT Color menu for regions and domains
Nucleotide and amino acid letters (in bold) in purple, green or blue are according to IMGT Color menu for splicing types.

IMGT links

IMGT Repertoire

Correspondence between nomenclatures (MHC): Teleostei
Chromosomal localization: Vertebrate species (table)
Protein displays (MHC): G-DOMAIN, C-LIKE-DOMAIN
Alignment of alleles:
Strand and loop lengths (MHC): G-DOMAIN, C-LIKE-DOMAIN
Collier de perles (MHC): C-LIKE-DOMAIN

IMGT databases

IMGT/3Dstructure-DB:

External links

Genome databases

Entrez Gene:

Sequence databases

EMBL: many entries (tables above)
GenBank: many entries (tables above)
DDBJ: many entries (tables above)
Swiss-Prot: many entries (tables above)
TrEMBL: many entries (tables above)
NCBI: many entries (tables above)

Structure databases

PDB: