Western lowland gorilla (Gorilla gorilla gorilla) IGH locus assembly Holistic_IMGT_reference on chromosome 14

The orientation of the western lowland gorilla (Gorilla gorilla gorilla) IGH Holistic IMGT reference map locus on the chromosome 14 is reverse (REV).

Legend:
Colors are according to IMGT color menu for genes.
The boxes representing the genes are not to scale. Exons are not shown.
A double slash // indicates a gap in genome assembly. Distances in bp (base pair) or in kb (kilobase) associated with a double slash are taken into account in the length of the lines and included in the numbers displayed at the right end of the lines.
A dotted line ... indicates the distance in kb (kilobase) between the locus and its bornes (5' borne and the most 5' gene in the locus and/or 3' borne and the most 3' gene in the locus) on the top and bottom lines, respectively. These distances are not represented at scale and/or are not included in IMGT-LOCUS-UNIT and may not be included in the numbers displayed at the right ends of these two lines .

IGH gene names are according to the IMGT nomenclature [1].

The IGHD6-5-1 to IGHD1-14 diversity genes are not found in the Kamilah_GGO_v0 assembly, there is a gap at this position (IMGT000074 accession number). However, the IGHD6-5-1 to IGHD1-14 are found in the Susie3 assembly (IMGT000078 accession number), in the NHGRI_mGorGor1-v1.1-0.2.freeze_mat assembly (IMGT000139 accession number) and in the NHGRI_mGorGor1-v1.1-0.2.freeze_pat assembly (IMGT000140 accession number).

The IGHV7-4-5, IGHV4-4-6, IGHV(II)-4-7, IGHV(II)-48, IGHV3-16, IGHV(III)-16-1, IGHV1-17, IGHV1-18, IGHV(III)-22-2, IGHV4-60-2, IGHV3-60-3, IGHV(II)-60-4, IGHV4-60-5, IGHV3-60-6, IGHV2-70D, IGHV1-69D, IGHD6-5-1, IGHD1-5-2, IGHD2-5-3, IGHD3-5-4, IGHD4-5-5, IGHD5-5-6, IGHD6-6, IGHD1-7, IGHD2-8, IGHD3-10, IGHD4-11, IGHD5-12, IGHD6-13, IGHD1-14, IGHJ2, IGHG3B, IGHG3C, IGHEP1, IGHA1 and IGHGP are found in the Susie3 assembly (IMGT000078 accession number).

The IGHV(II)-62-1D, IGHV3-63D, GOLGA4P3, IGHV3-64D, IGHV3-65D, IGHV(II)-65-1D and IGHV3-66D are found in the NHGRI_mGorGor1-v1.1-0.2.freeze_pat assembly (IMGT000140 accession number).

The IGHG3B, IGHG3C, IGHEP1, IGHA1, IGHGP, IGHG2, IGHG4, IGHE and IGHA2 are found in the Susie3 assembly (IMGT000078 accession number), in the NHGRI_mGorGor1-v1.1-0.2.freeze_mat assembly (IMGT000139 accession number) and in the NHGRI_mGorGor1-v1.1-0.2.freeze_pat assembly (IMGT000140 accession number).

Zoom for IGH Holistic IMGT reference mapD and IGH Holistic IMGT reference mapJ genes

• Gene table: Western lowland gorilla (Gorilla gorilla gorilla) IGHV
• Gene table: Western lowland gorilla (Gorilla gorilla gorilla) IGHD
• Gene table: Western lowland gorilla (Gorilla gorilla gorilla) IGHJ
• Gene table: Western lowland gorilla (Gorilla gorilla gorilla) IGHC
• Potential germline repertoire: Western lowland gorilla (Gorilla gorilla gorilla) IGHV, IGHD and IGHJ genes on chromosome 14

• Genomic orientation (IMGT Index)
• Taxonomy: Eutheria