Colliers de Perles
Make your own Collier de Perles with IMGT/Collier-de-Perles tool
V-REGION
- IGHV
- Mammalia: human (Homo sapiens), house mouse (Mus musculus), Arabian camel (Camelus dromedarius), llama (Lama glama), Hamster (Cricetinae gen. sp.), pig (Sus scrofa), sheep (Ovis aries), Norway rat (Rattus norvegicus), rabbit (Oryctolagus cuniculus), Rhesus monkey (Macaca mulatta), platypus (Ornithorhynchus anatinus), alpaca (Vicugna pacos), crab-eating macaque (Macaca fascicularis), bovine (Bos taurus), dog (Canis lupus familiaris), horse (Equus caballus), western lowland gorilla (Gorilla gorilla gorilla), Ring-tailed lemur (Lemur catta), Sumatran orangutan (Pongo abelii), domestic ferret (Mustela putorius furo), Bornean orangutan (Pongo pygmaeus), American mink (Neogale vison)
- Sauropsida: spectacled caiman (Caiman crocodilus), chicken (Gallus gallus)
- Amphibia: African clawed frog (Xenopus laevis)
- Teleostei: Japanese flounder (Paralichthys olivaceus), channel catfish (Ictalurus punctatus), Arctic char (Salvelinus alpinus), Atlantic cod (Gadus morhua), emerald rockcod (Trematomus bernacchii), goldfish (Carassius auratus), blackfin icefish (Chaenocephalus aceratus), ladyfish (Elops saurus), Atlantic salmon (Salmo salar), torafugu (Takifugu rubripes), rainbow trout (Oncorhynchus mykiss), black rockcod (Notothenia coriiceps), zebrafish (Danio rerio), spotted wolffish (Anarhichas minor)
- Chondrichthyes: nurse shark (Ginglymostoma cirratum), bull shark (Carcharhinus leucas), clearnose skate (Raja eglanteria), horn shark (Heterodontus francisci), little skate (Leucoraja erinacea), spotted ratfish (Hydrolagus colliei), sandbar shark (Carcharhinus plumbeus), spotted wobbegong (Orectolobus maculatus)
- Other: marbled lungfish (Protopterus aethiopicus)
- IGKV
- Mammalia: human (Homo sapiens), house mouse (Mus musculus), Hamster (Cricetinae gen. sp.), common brushtail (Trichosurus vulpecula), rabbit (Oryctolagus cuniculus), western wild mouse (Mus spretus), Norway rat (Rattus norvegicus), pig (Sus scrofa), Rhesus monkey (Macaca mulatta), dog (Canis lupus familiaris), goat (Capra hircus), sheep (Ovis aries), bovine (Bos taurus), domestic cat (Felis catus), horse (Equus caballus), Arabian camel (Camelus dromedarius), Ring-tailed lemur (Lemur catta), Sumatran orangutan (Pongo abelii), western lowland gorilla (Gorilla gorilla gorilla), Bornean orangutan (Pongo pygmaeus), domestic ferret (Mustela putorius furo)
- IGLV
- Mammalia: human (Homo sapiens), house mouse (Mus musculus), Hamster (Cricetinae gen. sp.), common brushtail (Trichosurus vulpecula), sheep (Ovis aries), western wild mouse (Mus spretus), Norway rat (Rattus norvegicus), rabbit (Oryctolagus cuniculus), pig (Sus scrofa), Rhesus monkey (Macaca mulatta), dog (Canis lupus familiaris), domestic cat (Felis catus), bovine (Bos taurus), goat (Capra hircus), western lowland gorilla (Gorilla gorilla gorilla), Ring-tailed lemur (Lemur catta), Sumatran orangutan (Pongo abelii), Bornean orangutan (Pongo pygmaeus), domestic ferret (Mustela putorius furo)
- Sauropsida: chicken (Gallus gallus)
- IGIV
- Teleostei: European seabass (Dicentrarchus labrax), common carp (Cyprinus carpio), channel catfish (Ictalurus punctatus), Atlantic cod (Gadus morhua), Atlantic salmon (Salmo salar), rainbow trout (Oncorhynchus mykiss), Japanese amberjack (Seriola quinqueradiata), zebrafish (Danio rerio), spotted wolffish (Anarhichas minor), mandarin fish (Siniperca chuatsi)
- Chondrichthyes: horn shark (Heterodontus francisci), nurse shark (Ginglymostoma cirratum), spotted ratfish (Hydrolagus colliei), sandbar shark (Carcharhinus plumbeus)
- TRAV
- Mammalia: human (Homo sapiens), house mouse (Mus musculus), goat (Capra hircus), Ma's night monkey (Aotus nancymaae), sheep (Ovis aries), dog (Canis lupus familiaris), Rhesus monkey (Macaca mulatta), common bottlenose dolphin (Tursiops truncatus), rabbit (Oryctolagus cuniculus), domestic cat (Felis catus), bovine (Bos taurus), Arabian camel (Camelus dromedarius), naked mole-rat (Heterocephalus glaber), western lowland gorilla (Gorilla gorilla gorilla), domestic ferret (Mustela putorius furo)
- Teleostei: torafugu (Takifugu rubripes), rainbow trout (Oncorhynchus mykiss), zebrafish (Danio rerio)
- TRBV
- Mammalia: human (Homo sapiens), Norway rat (Rattus norvegicus), house mouse (Mus musculus), goat (Capra hircus), Ma's night monkey (Aotus nancymaae), dog (Canis lupus familiaris), Rhesus monkey (Macaca mulatta), domestic ferret (Mustela putorius furo), rabbit (Oryctolagus cuniculus), pig (Sus scrofa), domestic cat (Felis catus), sheep (Ovis aries), Arabian camel (Camelus dromedarius), naked mole-rat (Heterocephalus glaber), crab-eating macaque (Macaca fascicularis), bovine (Bos taurus), western lowland gorilla (Gorilla gorilla gorilla)
- Amphibia: African clawed frog (Xenopus laevis)
- Teleostei: rainbow trout (Oncorhynchus mykiss)
- TRGV
- Mammalia: human (Homo sapiens), house mouse (Mus musculus), dog (Canis lupus familiaris), bovine (Bos taurus), Arabian camel (Camelus dromedarius), common bottlenose dolphin (Tursiops truncatus), rabbit (Oryctolagus cuniculus), domestic cat (Felis catus), Rhesus monkey (Macaca mulatta), naked mole-rat (Heterocephalus glaber), western lowland gorilla (Gorilla gorilla gorilla), domestic ferret (Mustela putorius furo)
- TRDV
- Mammalia: human (Homo sapiens), house mouse (Mus musculus), bovine (Bos taurus), Arabian camel (Camelus dromedarius), sheep (Ovis aries), dog (Canis lupus familiaris), Rhesus monkey (Macaca mulatta), common bottlenose dolphin (Tursiops truncatus), rabbit (Oryctolagus cuniculus), domestic cat (Felis catus), naked mole-rat (Heterocephalus glaber), western lowland gorilla (Gorilla gorilla gorilla), domestic ferret (Mustela putorius furo)
Other IMGT Collier de Perles (generated manually):
C-DOMAIN
- IGHC
- Mammalia: human (Homo sapiens), house mouse (Mus musculus), Norway rat (Rattus norvegicus), Arabian camel (Camelus dromedarius), black rat (Rattus rattus), bovine (Bos taurus), chimpanzee (Pan troglodytes), dog (Canis lupus familiaris), common gibbon (Hylobates lar), western gorilla (Gorilla gorilla), horse (Equus caballus), crab-eating macaque (Macaca fascicularis), gray short-tailed opossum (Monodelphis domestica), Bornean orangutan (Pongo pygmaeus), pig (Sus scrofa), common brushtail (Trichosurus vulpecula), rabbit (Oryctolagus cuniculus), sheep (Ovis aries), Armenian hamster (Cricetulus migratorius), domestic cat (Felis catus), Rhesus monkey (Macaca mulatta), (Papio anubis anubis), pig-tailed macaque (Macaca nemestrina), platypus (Ornithorhynchus anatinus), sooty mangabey (Cercocebus atys), alpaca (Vicugna pacos), western lowland gorilla (Gorilla gorilla gorilla), Ring-tailed lemur (Lemur catta), domestic ferret (Mustela putorius furo), Sumatran orangutan (Pongo abelii), American mink (Neogale vison), domestic guinea pig (Cavia porcellus)
- Sauropsida: chicken (Gallus gallus)
- Teleostei: Atlantic cod (Gadus morhua), Atlantic halibut (Hippoglossus hippoglossus), channel catfish (Ictalurus punctatus), Japanese flounder (Paralichthys olivaceus), river trout (Salmo trutta), common carp (Cyprinus carpio), Arctic char (Salvelinus alpinus), emerald rockcod (Trematomus bernacchii), blackfin icefish (Chaenocephalus aceratus), ladyfish (Elops saurus), rainbow trout (Oncorhynchus mykiss), black rockcod (Notothenia coriiceps), zebrafish (Danio rerio), spotted wolffish (Anarhichas minor), Atlantic salmon (Salmo salar)
- Chondrichthyes: clearnose skate (Raja eglanteria), horn shark (Heterodontus francisci), little skate (Leucoraja erinacea), nurse shark (Ginglymostoma cirratum), spotted ratfish (Hydrolagus colliei), sandbar shark (Carcharhinus plumbeus)
- Other: marbled lungfish (Protopterus aethiopicus)
- IGKC
- Mammalia: human (Homo sapiens), house mouse (Mus musculus), Norway rat (Rattus norvegicus), western wild mouse (Mus spretus), spiny mouse (Mus saxicola), Cook's mouse (Mus cookii), shrew mouse (Mus pahari), Southern African pygmy mouse (Mus minutoides), dog (Canis lupus familiaris), domestic cat (Felis catus), rabbit (Oryctolagus cuniculus), pig (Sus scrofa), Rhesus monkey (Macaca mulatta), goat (Capra hircus), sheep (Ovis aries), bovine (Bos taurus), horse (Equus caballus), Arabian camel (Camelus dromedarius), Ring-tailed lemur (Lemur catta), Sumatran orangutan (Pongo abelii), western lowland gorilla (Gorilla gorilla gorilla), Bornean orangutan (Pongo pygmaeus), domestic ferret (Mustela putorius furo)
- IGLC
- Mammalia: human (Homo sapiens), house mouse (Mus musculus), Hamster (Cricetinae gen. sp.), western wild mouse (Mus spretus), rabbit (Oryctolagus cuniculus), Norway rat (Rattus norvegicus), pig (Sus scrofa), Rhesus monkey (Macaca mulatta), dog (Canis lupus familiaris), domestic cat (Felis catus), bovine (Bos taurus), goat (Capra hircus), sheep (Ovis aries), western lowland gorilla (Gorilla gorilla gorilla), Ring-tailed lemur (Lemur catta), Sumatran orangutan (Pongo abelii), Bornean orangutan (Pongo pygmaeus), domestic ferret (Mustela putorius furo)
- Sauropsida: chicken (Gallus gallus)
- IGIC
- Teleostei: European seabass (Dicentrarchus labrax), common carp (Cyprinus carpio), channel catfish (Ictalurus punctatus), Atlantic cod (Gadus morhua), Atlantic salmon (Salmo salar), rainbow trout (Oncorhynchus mykiss), Japanese amberjack (Seriola quinqueradiata), zebrafish (Danio rerio), spotted wolffish (Anarhichas minor), mandarin fish (Siniperca chuatsi), three-spined stickleback (Gasterosteus aculeatus)
- IGHC duplicated genes (Collier de Perles generated manually):
- TRAC
- Mammalia: human (Homo sapiens), house mouse (Mus musculus), bovine (Bos taurus), sheep (Ovis aries), dog (Canis lupus familiaris), Rhesus monkey (Macaca mulatta), common bottlenose dolphin (Tursiops truncatus), rabbit (Oryctolagus cuniculus), domestic cat (Felis catus), naked mole-rat (Heterocephalus glaber), western lowland gorilla (Gorilla gorilla gorilla), domestic ferret (Mustela putorius furo)
- Teleostei: torafugu (Takifugu rubripes), zebrafish (Danio rerio)
- TRBC
- Mammalia: human (Homo sapiens), house mouse (Mus musculus), western wild mouse (Mus spretus), shrew mouse (Mus pahari), Southern African pygmy mouse (Mus minutoides), dog (Canis lupus familiaris), Rhesus monkey (Macaca mulatta), domestic ferret (Mustela putorius furo), rabbit (Oryctolagus cuniculus), pig (Sus scrofa), domestic cat (Felis catus), sheep (Ovis aries), Arabian camel (Camelus dromedarius), naked mole-rat (Heterocephalus glaber), crab-eating macaque (Macaca fascicularis), bovine (Bos taurus), western lowland gorilla (Gorilla gorilla gorilla)
- TRGC
- Mammalia: human (Homo sapiens), house mouse (Mus musculus), bovine (Bos taurus), sheep (Ovis aries), dog (Canis lupus familiaris), Arabian camel (Camelus dromedarius), common bottlenose dolphin (Tursiops truncatus), rabbit (Oryctolagus cuniculus), domestic cat (Felis catus), Rhesus monkey (Macaca mulatta), naked mole-rat (Heterocephalus glaber), western lowland gorilla (Gorilla gorilla gorilla), domestic ferret (Mustela putorius furo)
- TRDC
- Mammalia: human (Homo sapiens), house mouse (Mus musculus), bovine (Bos taurus), sheep (Ovis aries), dog (Canis lupus familiaris), Rhesus monkey (Macaca mulatta), common bottlenose dolphin (Tursiops truncatus), rabbit (Oryctolagus cuniculus), domestic cat (Felis catus), naked mole-rat (Heterocephalus glaber), western lowland gorilla (Gorilla gorilla gorilla), domestic ferret (Mustela putorius furo)
- Teleostei: zebrafish (Danio rerio)
V-DOMAIN (V-J-REGION and V-D-J-REGION)
- Examples of Colliers de Perles (link to IMGT/3Dstructure-DB):
For more V-DOMAINs, query "V-DOMAIN" in IMGT/3Dstructure-DB
and click on "IMGT Collier de Perles" in the IMGT/3Dstructure-DB cards.
- Archives: original princeps (manual) IMGT Collier de Perles, displayed for the first time online on 19/12/1997, by Manuel Ruiz and Marie-Paule Lefranc
Colliers de Perles with hydrogen bonds
For more V-DOMAINs with hydrogen bonds, query "V-DOMAIN" in IMGT/3Dstructure-DB
and click on "IMGT Collier de Perles" in the IMGT/3Dstructure-DB cards.
3D representations
V-DOMAIN
- TRAV-J
- TRBV-D-J
- TRGV-J
- TRDV-D-J
C-DOMAIN
- TRAC
- Mammalia:
human (Homo sapiens) B7
- TRBC
- Mammalia:
human (Homo sapiens) B7
- TRGC
- Mammalia:
human (Homo sapiens) G115
- TRDC
- Mammalia:
human (Homo sapiens) G115
FR-IMGT and CDR-IMGT lengths (V-REGION and V-DOMAIN)
FR-IMGT lengths for comparison of humanized antibodies
[CDR1-IMGT.CDR2-IMGT.CDR3-IMGT] lengths for V genes per species and locus
[CDR1-IMGT.CDR2-IMGT.] length per subgroup (archive)
- IGHV
- IGKV
- Mammalia:
human (Homo sapiens),
house mouse (Mus musculus),
dog (Canis lupus familiaris),
goat (Capra hircus),
sheep (Ovis aries),
bovine (Bos taurus),
cat (Felis catus),
horse (Equus caballus),
Arabian camel (Camelus dromedarius),
rhesus monkey (Macaca mulatta),
Ring-tailed lemur (Lemur catta)
- IGLV
Subgroups per [CDR1-IMGT.CDR2-IMGT.] length
- IGHV
- IGKV
- IGLV
- Comparison between IGHV, IGKV and IGLV
FR-IMGT and CDR-IMGT (V-REGION)
- IGHV
- Mammalia:
human (Homo sapiens),
house mouse (Mus musculus),
Arabian camel (Camelus dromedarius),
Llama (Lama glama),
sheep (Ovis aries),
pig (Sus scrofa),
Norway rat (Rattus norvegicus)
- Teleostei:
Atlantic cod (Gadus morhua),
Atlantic salmon (Salmo salar),
Bastard halibut (Paralichtys olivaceus),
Blackfin icefish (Chaenocephalus aceratus),
Channel catfish (Ictalurus punctatus),
Charr (Salvelinus alpinus),
Emerald rockcod (Trematomus bernacchii),
Goldfish (Carassius auratus),
Ladyfish (Elops saurus),
Rainbow trout (Oncorhynchus mykiss),
Spotted wolffish (Anarhichas minor),
Torafugu (Takifugu rubripes),
Yellowbelly rockcod (Notothenia coriiceps),
Zebrafish (Danio rerio)
- Chondrichthyes:
Bull shark (Carcharhinus leucas),
Sandbar shark (Carcharhinus plumbeus),
Nurse shark (Ginglyomostoma cirratum),
Horned shark (Heterodontus francisci),
Spotted ratfish (Hydrolagus colliei),
Spotted wobbegong shark (Orectolobus maculatus),
Clearnose skate (Raja eglanteria),
Little skate (Leucoraja erinacea)
- Sauropsida:
spectacled caiman (Caiman crocodilus)
- Amphibia:
African clawed frog (Xenopus laevis)
- Other:
marbled lungfish (Protopterus aethiopicus)
- IGKV
- IGLV
- IGIV
- Teleostei:
Atlantic cod (Gadus morhua),
Atlantic salmon (Salmo salar),
Channel catfish (Ictalurus punctatus),
Chinese perch (Siniperca chuatsi),
Common carp (Cyprinus carpio),
European sea bass (Dicentrarchus labrax),
Five-ray yellowtail (Seriola quinqueradiata),
Rainbow trout (Oncorhynchus mykiss),
Spotted wolffish (Anarhichas minor),
Zebrafish (Danio rerio)
- Chondrichthyes:
Sandbar shark (Carcharhinus plumbeus),
Nurse shark (Ginglyomostoma cirratum),
Spotted ratfish (Hydrolagus colliei),
Horned shark (Heterodontus francisci)
CDR1-IMGT (summary) and correspondence with "canonical structures"
CDR2-IMGT (summary) and correspondence with "canonical structures"
CDR3-IMGT (V-DOMAIN)
CDR-IMGT 3D structures
CDR1-IMGT
CDR2-IMGT
Tables of identification (V-DOMAIN)
Strand and loop lengths (C-DOMAIN)
- IGHC
- Mammalia:
human (Homo sapiens),
house mouse (Mus musculus),
Arabian camel (Camelus dromedarius),
bovine (Bos taurus),
dog (Canis lupus familiaris),
horse (Equus caballus),
pig (Sus scrofa),
gray short-tailed opossum (Monodelphis domestica),
common brush-tailed possum (Trichosurus vulpecula),
rabbit (Oryctolagus cuniculus),
Norway rat (Rattus norvegicus),
sheep (Ovis aries),
Chimpanzee (Pan troglodytes),
Common gibbon (Hylobates lar),
Gorilla (Gorilla gorilla),
Orangutan (Pongo pygmaeus)
- Other:
marbled lungfish (Protopterus aethiopicus)
- IGKC
- IGLC
- IGIC
- Teleostei:
Atlantic cod (Gadus morhua),
Atlantic salmon (Salmo salar),
Channel catfish (Ictalurus punctatus),
Chinese perch (Siniperca chuatsi),
Common carp (Cyprinus carpio),
European sea bass (Dicentrarchus labrax),
Five-ray yellowtail (Seriola quinqueradiata),
Rainbow trout (Oncorhynchus mykiss),
Spotted wolffish (Anarhichas minor),
Three spined stickleback (Gasterosteus aculeatus),
Zebrafish (Danio rerio)
Examples of C-DOMAINs
Protein displays
Strand and loop lengths
Proteins with known 3D structures
Overview
Identification and Colliers de Perles
Protein display V-DOMAIN
Classification by gene names
Classification by CDR-IMGT lengths
IG proteins updates from 09/05/2001 and TR proteins are available in IMGT/3Dstructure-DB.
- Created:
- 18/04/1997
- Last updated:
- Tuesday, 30-Jul-2024 18:26:03 CEST
- Editor:
- Chantal Ginestoux
